RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 DLEC1Q9Y238 1755 aa18.58■□□□□ 0.57
CCDC88C-207ENST00000554051 SERPINB2P05120 415 aa18.58■□□□□ 0.56
CCDC88C-207ENST00000554051 TBC1D9BQ66K14 1250 aa18.58■□□□□ 0.56
CCDC88C-207ENST00000554051 ANKRD36CQ5JPF3 1778 aa18.58■□□□□ 0.56
CCDC88C-207ENST00000554051 NPHP1O15259 732 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 GRIN3BO60391 1043 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 ST5P78524 1137 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 GPR162Q16538 588 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 HSP90AB3PQ58FF7 597 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 CNBD1Q8NA66 436 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 HYPKQ9NX55 129 aa18.57■□□□□ 0.56
CCDC88C-207ENST00000554051 BRCA1P38398 1863 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 NUP98P52948 1817 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 FANCIQ9NVI1 1328 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 PDIA6Q15084 440 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 KRT24Q2M2I5 525 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 CCDC30Q5VVM6 783 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 BICDL1Q6ZP65 573 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 LRP10Q7Z4F1 713 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 CHPF2Q9P2E5 772 aa18.56■□□□□ 0.56
CCDC88C-207ENST00000554051 GOLGA2Q08379 1002 aa18.55■□□□□ 0.56
CCDC88C-207ENST00000554051 NYXQ9GZU5 481 aa18.55■□□□□ 0.56
CCDC88C-207ENST00000554051 NIP7Q9Y221 180 aaKnown RBP eCLIP18.55■□□□□ 0.56
CCDC88C-207ENST00000554051 RNF123Q5XPI4 1314 aa18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 ZNF521Q96K83 1311 aa18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 PDE6BP35913 854 aa18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 GIGYF2Q6Y7W6 1299 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 NBPF5PQ86XG9 351 aaPredicted RBP18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 TSR2Q969E8 191 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 N4BP2Q86UW6 1770 aaPredicted RBP18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 RIC1Q4ADV7 1423 aa18.54■□□□□ 0.56
CCDC88C-207ENST00000554051 PROSER3Q2NL68 480 aa18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 TWISTNBQ3B726 338 aaPredicted RBP18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 PARP10Q53GL7 1025 aa18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 TPTE2Q6XPS3 522 aa18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 BRIP1Q9BX63 1249 aa18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 STK31Q9BXU1 1019 aa18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 ZBTB3Q9H5J0 574 aa18.53■□□□□ 0.56
CCDC88C-207ENST00000554051 ARFGEF1Q9Y6D6 1849 aa18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 PRR5LQ6MZQ0 368 aa18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 TTLL7Q6ZT98 887 aa18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 PELP1Q8IZL8 1130 aaKnown RBP18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 XAGE3Q8WTP9 111 aa18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 NECTIN2Q92692 538 aa18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 SALL2Q9Y467 1007 aaPredicted RBP18.52■□□□□ 0.56
CCDC88C-207ENST00000554051 ANKRD31Q8N7Z5 1873 aa18.52■□□□□ 0.55
CCDC88C-207ENST00000554051 COPS6Q7L5N1 327 aa18.51■□□□□ 0.55
CCDC88C-207ENST00000554051 C8orf58Q8NAV2 365 aa18.51■□□□□ 0.55
CCDC88C-207ENST00000554051 PLBD2Q8NHP8 589 aa18.51■□□□□ 0.55
CCDC88C-207ENST00000554051 CACNA1FO60840 1977 aa18.51■□□□□ 0.55
CCDC88C-207ENST00000554051 ARFGEF2Q9Y6D5 1785 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 E9PSI1 815 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 DDX58O95786 925 aaKnown RBP18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 DPEP1P16444 411 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 HLFQ16534 295 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 PPP1R42Q7Z4L9 355 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 PIM2Q9P1W9 311 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 CHD4Q14839 1912 aa18.5■□□□□ 0.55
CCDC88C-207ENST00000554051 ANXA1P04083 346 aa18.49■□□□□ 0.55
CCDC88C-207ENST00000554051 COL11A2P13942 1736 aaPredicted RBP18.49■□□□□ 0.55
CCDC88C-207ENST00000554051 H0YIN7 160 aa18.48■□□□□ 0.55
CCDC88C-207ENST00000554051 ELL2O00472 640 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-207ENST00000554051 GTF2E1P29083 439 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-207ENST00000554051 ZNF34Q8IZ26 560 aa18.48■□□□□ 0.55
CCDC88C-207ENST00000554051 MIER1Q8N108 512 aa18.48■□□□□ 0.55
CCDC88C-207ENST00000554051 SENP3-EIF4A1A0A087X0R7 540 aa18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 A0A0G2JLW4 131 aa18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 YBX3P16989 372 aaKnown RBP eCLIP18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 AIMP1Q12904 312 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 DALRD3Q5D0E6 543 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 ANKRD13DQ6ZTN6 518 aa18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 C2CD5Q86YS7 1000 aa18.47■□□□□ 0.55
CCDC88C-207ENST00000554051 TSPYL6Q8N831 410 aa18.46■□□□□ 0.55
CCDC88C-207ENST00000554051 UBN2Q6ZU65 1347 aa18.46■□□□□ 0.55
CCDC88C-207ENST00000554051 TCIRG1Q13488 830 aa18.45■□□□□ 0.54
CCDC88C-207ENST00000554051 STYK1Q6J9G0 422 aa18.45■□□□□ 0.54
CCDC88C-207ENST00000554051 BCS1LQ9Y276 419 aa18.45■□□□□ 0.54
CCDC88C-207ENST00000554051 GPTP24298 496 aa18.44■□□□□ 0.54
CCDC88C-207ENST00000554051 EXOSC9Q06265 439 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-207ENST00000554051 CNKSR1Q969H4 720 aa18.44■□□□□ 0.54
CCDC88C-207ENST00000554051 ZNF428Q96B54 188 aa18.44■□□□□ 0.54
CCDC88C-207ENST00000554051 UTP14AQ9BVJ6 771 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-207ENST00000554051 NTSR2O95665 410 aa18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 KCNA3P22001 575 aa18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 CHRNA5P30532 468 aa18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 RIC3Q7Z5B4 369 aa18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 TTLL6Q8N841 843 aa18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 MASTLQ96GX5 879 aa18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 TNRC6CQ9HCJ0 1690 aaKnown RBP18.43■□□□□ 0.54
CCDC88C-207ENST00000554051 ABCC12Q96J65 1359 aa18.42■□□□□ 0.54
CCDC88C-207ENST00000554051 LAMB2P55268 1798 aa18.42■□□□□ 0.54
CCDC88C-207ENST00000554051 KLRG2A4D1S0 409 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-207ENST00000554051 VAMP4O75379 141 aa18.42■□□□□ 0.54
CCDC88C-207ENST00000554051 HSP90B1P14625 803 aaKnown RBP18.42■□□□□ 0.54
CCDC88C-207ENST00000554051 SOGA3Q5TF21 947 aa18.42■□□□□ 0.54
CCDC88C-207ENST00000554051 SRGNP10124 158 aa18.41■□□□□ 0.54
CCDC88C-207ENST00000554051 NPR1P16066 1061 aa18.41■□□□□ 0.54
CCDC88C-207ENST00000554051 TRIM28Q13263 835 aaKnown RBP18.41■□□□□ 0.54
CCDC88C-207ENST00000554051 SUSD4Q5VX71 490 aa18.41■□□□□ 0.54
CCDC88C-207ENST00000554051 NLRP10Q86W26 655 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms