RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 ZNF652Q9Y2D9 606 aa9.44□□□□□ -0.9
PTCH1-219ENST00000549678 CARMIL3Q8ND23 1372 aa9.44□□□□□ -0.9
PTCH1-219ENST00000549678 AFDNP55196 1824 aaKnown RBP9.43□□□□□ -0.9
PTCH1-219ENST00000549678 H0YIN7 160 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 KIF3CO14782 793 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 CHRNA5P30532 468 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 PDE6BP35913 854 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 C9orf131Q5VYM1 1079 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 CLEC4GQ6UXB4 293 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 TTLL6Q8N841 843 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 ZNF526Q8TF50 670 aaPredicted RBP9.43□□□□□ -0.9
PTCH1-219ENST00000549678 CFAP44Q96MT7 982 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 BRIP1Q9BX63 1249 aa9.43□□□□□ -0.9
PTCH1-219ENST00000549678 KDM2BQ8NHM5 1336 aa9.42□□□□□ -0.9
PTCH1-219ENST00000549678 TOMM70O94826 608 aa9.42□□□□□ -0.9
PTCH1-219ENST00000549678 HSPA6P17066 643 aa9.42□□□□□ -0.9
PTCH1-219ENST00000549678 SETDB2Q96T68 719 aa9.42□□□□□ -0.9
PTCH1-219ENST00000549678 IFT57Q9NWB7 429 aa9.42□□□□□ -0.9
PTCH1-219ENST00000549678 PCNTO95613 3336 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 ERBB4Q15303 1308 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 CHL1O00533 1208 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 CAMTA2O94983 1202 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 HDGFL1Q5TGJ6 251 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 TBC1D9BQ66K14 1250 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 C2CD5Q86YS7 1000 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 MBIPQ9NS73 344 aa9.41□□□□□ -0.9
PTCH1-219ENST00000549678 NUP98P52948 1817 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 DLEC1Q9Y238 1755 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 CCER2I3L3R5 266 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 ELL2O00472 640 aaPredicted RBP9.4□□□□□ -0.9
PTCH1-219ENST00000549678 LMNB1P20700 586 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 GTF2E1P29083 439 aaPredicted RBP9.4□□□□□ -0.9
PTCH1-219ENST00000549678 ST5P78524 1137 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 SOGA3Q5TF21 947 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 PRR5LQ6MZQ0 368 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 CNBD1Q8NA66 436 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 RBM46Q8TBY0 533 aaKnown RBP9.4□□□□□ -0.9
PTCH1-219ENST00000549678 CHMP4AQ9BY43 222 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 RNF181Q9P0P0 153 aa9.4□□□□□ -0.9
PTCH1-219ENST00000549678 SBF1O95248 1867 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 FAM177BA6PVY3 158 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 NBPF26B4DH59 902 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 AIMP1Q12904 312 aaKnown RBP9.39□□□□□ -0.91
PTCH1-219ENST00000549678 CCDC27Q2M243 656 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 KRT24Q2M2I5 525 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 DUSP27Q5VZP5 1158 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 NBPF10Q6P3W6 841 aaKnown RBP9.39□□□□□ -0.91
PTCH1-219ENST00000549678 WWC1Q8IX03 1113 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 C16orf71Q8IYS4 520 aaPredicted RBP9.39□□□□□ -0.91
PTCH1-219ENST00000549678 NBPF15Q8N660 670 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 CNKSR1Q969H4 720 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 ZBTB3Q9H5J0 574 aa9.39□□□□□ -0.91
PTCH1-219ENST00000549678 NIP7Q9Y221 180 aaKnown RBP eCLIP9.39□□□□□ -0.91
PTCH1-219ENST00000549678 CACNA1SQ13698 1873 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 MAP3K15Q6ZN16 1313 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 ANKRD36CQ5JPF3 1778 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 ANXA1P04083 346 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 HOXB7P09629 217 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 APLP1P51693 650 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 FSTL1Q12841 308 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 STYK1Q6J9G0 422 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 NBPF5PQ86XG9 351 aaPredicted RBP9.38□□□□□ -0.91
PTCH1-219ENST00000549678 TSR2Q969E8 191 aaKnown RBP9.38□□□□□ -0.91
PTCH1-219ENST00000549678 STK31Q9BXU1 1019 aa9.38□□□□□ -0.91
PTCH1-219ENST00000549678 DBF4Q9UBU7 674 aaPredicted RBP9.38□□□□□ -0.91
PTCH1-219ENST00000549678 LTBP3Q9NS15 1303 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 GOLGA2Q08379 1002 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 TPTE2Q6XPS3 522 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 TTLL7Q6ZT98 887 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 ZNF622Q969S3 477 aaKnown RBP eCLIP9.37□□□□□ -0.91
PTCH1-219ENST00000549678 MASTLQ96GX5 879 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 MYH16Q9H6N6 1097 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 NMRK2Q9NPI5 230 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 CHPF2Q9P2E5 772 aa9.37□□□□□ -0.91
PTCH1-219ENST00000549678 IL16Q14005 1332 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 KLRG2A4D1S0 409 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-219ENST00000549678 GLTPD2A6NH11 291 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 ERVV-1B6SEH8 477 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 NFKBIEO00221 500 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 ZNF853P0CG23 659 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 SRGNP10124 158 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 GPTP24298 496 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 TWISTNBQ3B726 338 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-219ENST00000549678 NCBP3Q53F19 620 aaKnown RBP9.36□□□□□ -0.91
PTCH1-219ENST00000549678 HSP90AB3PQ58FF7 597 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 CCDC30Q5VVM6 783 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 COPS6Q7L5N1 327 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 WDR63Q8IWG1 891 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 CCDC24Q8N4L8 307 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 XAGE3Q8WTP9 111 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 NYXQ9GZU5 481 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 DDX21Q9NR30 783 aaKnown RBP eCLIP9.36□□□□□ -0.91
PTCH1-219ENST00000549678 ANKRD31Q8N7Z5 1873 aa9.36□□□□□ -0.91
PTCH1-219ENST00000549678 TNRC6CQ9HCJ0 1690 aaKnown RBP9.36□□□□□ -0.91
PTCH1-219ENST00000549678 FANCIQ9NVI1 1328 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 ARFGEF2Q9Y6D5 1785 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 DDX58O95786 925 aaKnown RBP9.35□□□□□ -0.91
PTCH1-219ENST00000549678 VEGFAP15692 232 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-219ENST00000549678 NPR1P16066 1061 aa9.35□□□□□ -0.91
PTCH1-219ENST00000549678 RASSF7Q02833 373 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms