RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 CNBD1Q8NA66 436 aa15.38■□□□□ 0.05
HDAC4-216ENST00000544989 BRIP1Q9BX63 1249 aa15.38■□□□□ 0.05
HDAC4-216ENST00000544989 IFT57Q9NWB7 429 aa15.38■□□□□ 0.05
HDAC4-216ENST00000544989 BCS1LQ9Y276 419 aa15.38■□□□□ 0.05
HDAC4-216ENST00000544989 LAS1LQ9Y4W2 734 aaKnown RBP15.38■□□□□ 0.05
HDAC4-216ENST00000544989 BCORQ6W2J9 1755 aa15.37■□□□□ 0.05
HDAC4-216ENST00000544989 GNAI1P63096 354 aa15.37■□□□□ 0.05
HDAC4-216ENST00000544989 H0YIN7 160 aa15.36■□□□□ 0.05
HDAC4-216ENST00000544989 KCNA3P22001 575 aa15.36■□□□□ 0.05
HDAC4-216ENST00000544989 CCDC27Q2M243 656 aa15.36■□□□□ 0.05
HDAC4-216ENST00000544989 NBPF5PQ86XG9 351 aaPredicted RBP15.36■□□□□ 0.05
HDAC4-216ENST00000544989 KIAA1551Q9HCM1 1747 aa15.36■□□□□ 0.05
HDAC4-216ENST00000544989 MAP3K15Q6ZN16 1313 aa15.36■□□□□ 0.05
HDAC4-216ENST00000544989 N4BP2Q86UW6 1770 aaPredicted RBP15.36■□□□□ 0.05
HDAC4-216ENST00000544989 AFDNP55196 1824 aaKnown RBP15.36■□□□□ 0.05
HDAC4-216ENST00000544989 EIF2S2P20042 333 aaKnown RBP15.35■□□□□ 0.05
HDAC4-216ENST00000544989 PRR5LQ6MZQ0 368 aa15.35■□□□□ 0.05
HDAC4-216ENST00000544989 TPTE2Q6XPS3 522 aa15.35■□□□□ 0.05
HDAC4-216ENST00000544989 NIP7Q9Y221 180 aaKnown RBP eCLIP15.35■□□□□ 0.05
HDAC4-216ENST00000544989 ZNF853P0CG23 659 aa15.34■□□□□ 0.05
HDAC4-216ENST00000544989 MYL6BP14649 208 aa15.34■□□□□ 0.05
HDAC4-216ENST00000544989 C2CD5Q86YS7 1000 aa15.34■□□□□ 0.05
HDAC4-216ENST00000544989 NYXQ9GZU5 481 aa15.34■□□□□ 0.05
HDAC4-216ENST00000544989 CHRNA5P30532 468 aa15.33■□□□□ 0.04
HDAC4-216ENST00000544989 CCDC184Q52MB2 194 aa15.33■□□□□ 0.04
HDAC4-216ENST00000544989 NGEFQ8N5V2 710 aa15.33■□□□□ 0.04
HDAC4-216ENST00000544989 TTLL6Q8N841 843 aa15.33■□□□□ 0.04
HDAC4-216ENST00000544989 WWC3Q9ULE0 1092 aa15.33■□□□□ 0.04
HDAC4-216ENST00000544989 BRCA1P38398 1863 aaKnown RBP15.33■□□□□ 0.04
HDAC4-216ENST00000544989 HDGFL1Q5TGJ6 251 aa15.32■□□□□ 0.04
HDAC4-216ENST00000544989 ARHGAP27Q6ZUM4 889 aa15.32■□□□□ 0.04
HDAC4-216ENST00000544989 GPBP1L1Q9HC44 474 aaPredicted RBP15.32■□□□□ 0.04
HDAC4-216ENST00000544989 DDX21Q9NR30 783 aaKnown RBP eCLIP15.32■□□□□ 0.04
HDAC4-216ENST00000544989 MBIPQ9NS73 344 aa15.32■□□□□ 0.04
HDAC4-216ENST00000544989 ARFGEF1Q9Y6D6 1849 aa15.31■□□□□ 0.04
HDAC4-216ENST00000544989 GTF2E1P29083 439 aaPredicted RBP15.31■□□□□ 0.04
HDAC4-216ENST00000544989 PDIA6Q15084 440 aa15.31■□□□□ 0.04
HDAC4-216ENST00000544989 HSP90AB3PQ58FF7 597 aa15.31■□□□□ 0.04
HDAC4-216ENST00000544989 GIGYF2Q6Y7W6 1299 aaKnown RBP15.31■□□□□ 0.04
HDAC4-216ENST00000544989 DBF4Q9UBU7 674 aaPredicted RBP15.31■□□□□ 0.04
HDAC4-216ENST00000544989 IBTKQ9P2D0 1353 aaPredicted RBP15.31■□□□□ 0.04
HDAC4-216ENST00000544989 IL16Q14005 1332 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 HLFQ16534 295 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 PARP10Q53GL7 1025 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 DUSP27Q5VZP5 1158 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 STYK1Q6J9G0 422 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 TTLL7Q6ZT98 887 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 CNKSR1Q969H4 720 aa15.3■□□□□ 0.04
HDAC4-216ENST00000544989 SOGA3Q5TF21 947 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 LRP10Q7Z4F1 713 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 PPP1R42Q7Z4L9 355 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 DNAJC5GQ8N7S2 189 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 ZNF622Q969S3 477 aaKnown RBP eCLIP15.29■□□□□ 0.04
HDAC4-216ENST00000544989 MASTLQ96GX5 879 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 ZBTB3Q9H5J0 574 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 HYPKQ9NX55 129 aa15.29■□□□□ 0.04
HDAC4-216ENST00000544989 RNF123Q5XPI4 1314 aa15.28■□□□□ 0.04
HDAC4-216ENST00000544989 KLRG2A4D1S0 409 aaPredicted RBP15.28■□□□□ 0.04
HDAC4-216ENST00000544989 WWC1Q8IX03 1113 aa15.28■□□□□ 0.04
HDAC4-216ENST00000544989 ZNF34Q8IZ26 560 aa15.28■□□□□ 0.04
HDAC4-216ENST00000544989 DLEC1Q9Y238 1755 aa15.28■□□□□ 0.04
HDAC4-216ENST00000544989 KIF3CO14782 793 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 SRGNP10124 158 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 NPR1P16066 1061 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 KRT24Q2M2I5 525 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 PROSER3Q2NL68 480 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 COPS6Q7L5N1 327 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 XAGE3Q8WTP9 111 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 NECTIN2Q92692 538 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 CHPF2Q9P2E5 772 aa15.27■□□□□ 0.04
HDAC4-216ENST00000544989 NUP98P52948 1817 aa15.27■□□□□ 0.03
HDAC4-216ENST00000544989 RIC1Q4ADV7 1423 aa15.26■□□□□ 0.03
HDAC4-216ENST00000544989 WDR63Q8IWG1 891 aa15.26■□□□□ 0.03
HDAC4-216ENST00000544989 ANKRD31Q8N7Z5 1873 aa15.25■□□□□ 0.03
HDAC4-216ENST00000544989 ZC3H4Q9UPT8 1303 aaKnown RBP15.25■□□□□ 0.03
HDAC4-216ENST00000544989 ALDH1B1P30837 517 aa15.25■□□□□ 0.03
HDAC4-216ENST00000544989 AIMP1Q12904 312 aaKnown RBP15.25■□□□□ 0.03
HDAC4-216ENST00000544989 CCDC30Q5VVM6 783 aa15.25■□□□□ 0.03
HDAC4-216ENST00000544989 CCDC24Q8N4L8 307 aa15.25■□□□□ 0.03
HDAC4-216ENST00000544989 PLBD2Q8NHP8 589 aa15.25■□□□□ 0.03
HDAC4-216ENST00000544989 FAM177BA6PVY3 158 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 ANXA1P04083 346 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 GPTP24298 496 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 APLP1P51693 650 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 TCIRG1Q13488 830 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 ANKRD13DQ6ZTN6 518 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 FAM9BQ8IZU0 186 aa15.24■□□□□ 0.03
HDAC4-216ENST00000544989 UTP14AQ9BVJ6 771 aaKnown RBP15.24■□□□□ 0.03
HDAC4-216ENST00000544989 UBN2Q6ZU65 1347 aa15.23■□□□□ 0.03
HDAC4-216ENST00000544989 LMNB1P20700 586 aa15.23■□□□□ 0.03
HDAC4-216ENST00000544989 C9orf131Q5VYM1 1079 aa15.23■□□□□ 0.03
HDAC4-216ENST00000544989 PRPF40BQ6NWY9 871 aaKnown RBP15.23■□□□□ 0.03
HDAC4-216ENST00000544989 NTSR2O95665 410 aa15.22■□□□□ 0.03
HDAC4-216ENST00000544989 DDX58O95786 925 aaKnown RBP15.22■□□□□ 0.03
HDAC4-216ENST00000544989 GOLGA2Q08379 1002 aa15.22■□□□□ 0.03
HDAC4-216ENST00000544989 CRY2Q49AN0 593 aa15.22■□□□□ 0.03
HDAC4-216ENST00000544989 SUSD4Q5VX71 490 aa15.22■□□□□ 0.03
HDAC4-216ENST00000544989 STK31Q9BXU1 1019 aa15.22■□□□□ 0.03
HDAC4-216ENST00000544989 ELL2O00472 640 aaPredicted RBP15.21■□□□□ 0.03
HDAC4-216ENST00000544989 ERFEQ4G0M1 354 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms