RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 PROSER3Q2NL68 480 aa14.9□□□□□ -0.02
YBX3-216ENST00000544622 TTLL7Q6ZT98 887 aa14.9□□□□□ -0.02
YBX3-216ENST00000544622 ZNF652Q9Y2D9 606 aa14.9□□□□□ -0.02
YBX3-216ENST00000544622 MAP3K15Q6ZN16 1313 aa14.9□□□□□ -0.02
YBX3-216ENST00000544622 BRCA1P38398 1863 aaKnown RBP14.89□□□□□ -0.03
YBX3-216ENST00000544622 MYL6BP14649 208 aa14.89□□□□□ -0.03
YBX3-216ENST00000544622 CHRNA5P30532 468 aa14.89□□□□□ -0.03
YBX3-216ENST00000544622 BRIP1Q9BX63 1249 aa14.89□□□□□ -0.03
YBX3-216ENST00000544622 PIM2Q9P1W9 311 aa14.89□□□□□ -0.03
YBX3-216ENST00000544622 WWC3Q9ULE0 1092 aa14.89□□□□□ -0.03
YBX3-216ENST00000544622 NGEFQ8N5V2 710 aa14.88□□□□□ -0.03
YBX3-216ENST00000544622 DDX21Q9NR30 783 aaKnown RBP eCLIP14.88□□□□□ -0.03
YBX3-216ENST00000544622 CHD4Q14839 1912 aa14.88□□□□□ -0.03
YBX3-216ENST00000544622 ATP10DQ9P241 1426 aa14.87□□□□□ -0.03
YBX3-216ENST00000544622 KLRG2A4D1S0 409 aaPredicted RBP14.87□□□□□ -0.03
YBX3-216ENST00000544622 ANXA1P04083 346 aa14.87□□□□□ -0.03
YBX3-216ENST00000544622 DUSP27Q5VZP5 1158 aa14.87□□□□□ -0.03
YBX3-216ENST00000544622 GIGYF2Q6Y7W6 1299 aaKnown RBP14.87□□□□□ -0.03
YBX3-216ENST00000544622 NIP7Q9Y221 180 aaKnown RBP eCLIP14.87□□□□□ -0.03
YBX3-216ENST00000544622 BCS1LQ9Y276 419 aa14.87□□□□□ -0.03
YBX3-216ENST00000544622 ZNF34Q8IZ26 560 aa14.86□□□□□ -0.03
YBX3-216ENST00000544622 CNBD1Q8NA66 436 aa14.86□□□□□ -0.03
YBX3-216ENST00000544622 PDZRN3Q9UPQ7 1066 aa14.86□□□□□ -0.03
YBX3-216ENST00000544622 IL16Q14005 1332 aa14.86□□□□□ -0.03
YBX3-216ENST00000544622 SENP3-EIF4A1A0A087X0R7 540 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 PDE6BP35913 854 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 DALRD3Q5D0E6 543 aaKnown RBP14.85□□□□□ -0.03
YBX3-216ENST00000544622 HDGFL1Q5TGJ6 251 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 TPTE2Q6XPS3 522 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 KIF6Q6ZMV9 814 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 COPS6Q7L5N1 327 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 CCDC24Q8N4L8 307 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 C8orf58Q8NAV2 365 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 NECTIN2Q92692 538 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 ZBTB3Q9H5J0 574 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 CHPF2Q9P2E5 772 aa14.85□□□□□ -0.03
YBX3-216ENST00000544622 DBF4Q9UBU7 674 aaPredicted RBP14.85□□□□□ -0.03
YBX3-216ENST00000544622 ANKRD31Q8N7Z5 1873 aa14.84□□□□□ -0.03
YBX3-216ENST00000544622 H0YIN7 160 aa14.84□□□□□ -0.03
YBX3-216ENST00000544622 NBPF5PQ86XG9 351 aaPredicted RBP14.84□□□□□ -0.03
YBX3-216ENST00000544622 C2CD5Q86YS7 1000 aa14.84□□□□□ -0.03
YBX3-216ENST00000544622 FAM9BQ8IZU0 186 aa14.84□□□□□ -0.03
YBX3-216ENST00000544622 ZNF784Q8NCA9 323 aaPredicted RBP14.84□□□□□ -0.03
YBX3-216ENST00000544622 UBN2Q6ZU65 1347 aa14.84□□□□□ -0.03
YBX3-216ENST00000544622 NUP98P52948 1817 aa14.83□□□□□ -0.04
YBX3-216ENST00000544622 SRGNP10124 158 aa14.83□□□□□ -0.04
YBX3-216ENST00000544622 WDR63Q8IWG1 891 aa14.83□□□□□ -0.04
YBX3-216ENST00000544622 TSPYL6Q8N831 410 aa14.83□□□□□ -0.04
YBX3-216ENST00000544622 XAGE3Q8WTP9 111 aa14.83□□□□□ -0.04
YBX3-216ENST00000544622 DLEC1Q9Y238 1755 aa14.83□□□□□ -0.04
YBX3-216ENST00000544622 ELL2O00472 640 aaPredicted RBP14.82□□□□□ -0.04
YBX3-216ENST00000544622 ST5P78524 1137 aa14.82□□□□□ -0.04
YBX3-216ENST00000544622 SUSD4Q5VX71 490 aa14.82□□□□□ -0.04
YBX3-216ENST00000544622 TTLL6Q8N841 843 aa14.82□□□□□ -0.04
YBX3-216ENST00000544622 TSR2Q969E8 191 aaKnown RBP14.82□□□□□ -0.04
YBX3-216ENST00000544622 ARFGEF1Q9Y6D6 1849 aa14.82□□□□□ -0.04
YBX3-216ENST00000544622 ADCY9O60503 1353 aa14.82□□□□□ -0.04
YBX3-216ENST00000544622 IBTKQ9P2D0 1353 aaPredicted RBP14.82□□□□□ -0.04
YBX3-216ENST00000544622 HYPKQ9NX55 129 aa14.81□□□□□ -0.04
YBX3-216ENST00000544622 CCER2I3L3R5 266 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 NTSR2O95665 410 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 GPTP24298 496 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 AIMP1Q12904 312 aaKnown RBP14.8□□□□□ -0.04
YBX3-216ENST00000544622 TCIRG1Q13488 830 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 STYK1Q6J9G0 422 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 ANKRD13DQ6ZTN6 518 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 PLBD2Q8NHP8 589 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 MASTLQ96GX5 879 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 NYXQ9GZU5 481 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 SPINK5Q9NQ38 1064 aaPredicted RBP14.8□□□□□ -0.04
YBX3-216ENST00000544622 ZNF521Q96K83 1311 aa14.8□□□□□ -0.04
YBX3-216ENST00000544622 FAM177BA6PVY3 158 aa14.79□□□□□ -0.04
YBX3-216ENST00000544622 CRY2Q49AN0 593 aa14.79□□□□□ -0.04
YBX3-216ENST00000544622 RIC1Q4ADV7 1423 aa14.79□□□□□ -0.04
YBX3-216ENST00000544622 PARP10Q53GL7 1025 aa14.79□□□□□ -0.04
YBX3-216ENST00000544622 ARHGAP27Q6ZUM4 889 aa14.79□□□□□ -0.04
YBX3-216ENST00000544622 NUTM1Q86Y26 1132 aa14.79□□□□□ -0.04
YBX3-216ENST00000544622 COL11A2P13942 1736 aaPredicted RBP14.78□□□□□ -0.04
YBX3-216ENST00000544622 ABCC12Q96J65 1359 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 FANCIQ9NVI1 1328 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 ERFEQ4G0M1 354 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 HSP90AB3PQ58FF7 597 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 SLC10A5Q5PT55 438 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 C7orf43Q8WVR3 580 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 CHMP4AQ9BY43 222 aa14.78□□□□□ -0.04
YBX3-216ENST00000544622 PHAXQ9H814 394 aaKnown RBP14.78□□□□□ -0.04
YBX3-216ENST00000544622 SALL2Q9Y467 1007 aaPredicted RBP14.78□□□□□ -0.04
YBX3-216ENST00000544622 NPHP1O15259 732 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 NPR1P16066 1061 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 CCDC30Q5VVM6 783 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 PPP1R42Q7Z4L9 355 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 NLRP10Q86W26 655 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 CNKSR1Q969H4 720 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 ZNF622Q969S3 477 aaKnown RBP eCLIP14.77□□□□□ -0.052e-15■□□□□ 9.4
YBX3-216ENST00000544622 ISCA1Q9BUE6 129 aa14.77□□□□□ -0.05
YBX3-216ENST00000544622 GTF2E1P29083 439 aaPredicted RBP14.76□□□□□ -0.05
YBX3-216ENST00000544622 PRELPP51888 382 aa14.76□□□□□ -0.05
YBX3-216ENST00000544622 TRIM28Q13263 835 aaKnown RBP14.76□□□□□ -0.05
YBX3-216ENST00000544622 TWISTNBQ3B726 338 aaPredicted RBP14.76□□□□□ -0.05
YBX3-216ENST00000544622 UTP14AQ9BVJ6 771 aaKnown RBP14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms