RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 FKBP4Q02790 459 aaKnown RBP eCLIP10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 BRIP1Q9BX63 1249 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 GLIS2Q9BZE0 524 aaPredicted RBP10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 BCL2L12Q9HB09 334 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 TERF2IPQ9NYB0 399 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 HDAC9Q9UKV0 1011 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 PDZRN3Q9UPQ7 1066 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 SOS1Q07889 1333 aaPredicted RBP10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 SZT2Q5T011 3432 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 SCNN1DP51172 638 aa10.98□□□□□ -0.65
CHMP4A-209ENST00000542700 HUNKP57058 714 aa10.98□□□□□ -0.65
CHMP4A-209ENST00000542700 KIF23Q02241 960 aaPredicted RBP10.98□□□□□ -0.65
CHMP4A-209ENST00000542700 USP50Q70EL3 339 aaPredicted RBP10.98□□□□□ -0.65
CHMP4A-209ENST00000542700 NARFQ9UHQ1 456 aa10.98□□□□□ -0.65
CHMP4A-209ENST00000542700 MKI67P46013 3256 aaKnown RBP10.98□□□□□ -0.65
CHMP4A-209ENST00000542700 POTEFA5A3E0 1075 aa10.97□□□□□ -0.65
CHMP4A-209ENST00000542700 STYK1Q6J9G0 422 aa10.97□□□□□ -0.65
CHMP4A-209ENST00000542700 COL15A1P39059 1388 aa10.97□□□□□ -0.65
CHMP4A-209ENST00000542700 BCORQ6W2J9 1755 aa10.97□□□□□ -0.65
CHMP4A-209ENST00000542700 ARFGEF2Q9Y6D5 1785 aa10.96□□□□□ -0.65
CHMP4A-209ENST00000542700 FLT4P35916 1363 aa10.96□□□□□ -0.65
CHMP4A-209ENST00000542700 FAM155AB1AL88 458 aaPredicted RBP10.96□□□□□ -0.65
CHMP4A-209ENST00000542700 IARSP41252 1262 aaKnown RBP10.96□□□□□ -0.65
CHMP4A-209ENST00000542700 PRR5LQ6MZQ0 368 aa10.96□□□□□ -0.65
CHMP4A-209ENST00000542700 OLFM4Q6UX06 510 aa10.96□□□□□ -0.65
CHMP4A-209ENST00000542700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.96□□□□□ -0.656e-7■■■■□ 20.8
CHMP4A-209ENST00000542700 NCAPD2Q15021 1401 aa10.95□□□□□ -0.66
CHMP4A-209ENST00000542700 ERVV-2B6SEH9 535 aa10.95□□□□□ -0.66
CHMP4A-209ENST00000542700 EIF6P56537 245 aaKnown RBP10.95□□□□□ -0.66
CHMP4A-209ENST00000542700 FBXO46Q6PJ61 603 aaPredicted RBP10.95□□□□□ -0.66
CHMP4A-209ENST00000542700 C7orf43Q8WVR3 580 aa10.95□□□□□ -0.66
CHMP4A-209ENST00000542700 SRGNP10124 158 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 CABP4P57796 275 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 RGMBQ6NW40 437 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 MPNDQ8N594 471 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 JDP2Q8WYK2 163 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 MASTLQ96GX5 879 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 COL25A1Q9BXS0 654 aaPredicted RBP10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 AKAP11Q9UKA4 1901 aa10.94□□□□□ -0.66
CHMP4A-209ENST00000542700 NPHP1O15259 732 aa10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 TBC1D9BQ66K14 1250 aa10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 CHRDL2Q6WN34 429 aa10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 DNAJC10Q8IXB1 793 aa10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 ZNF296Q8WUU4 475 aaPredicted RBP10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 OTUD5Q96G74 571 aa10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 COL6A3P12111 3177 aa10.93□□□□□ -0.66
CHMP4A-209ENST00000542700 TONSLQ96HA7 1378 aa10.92□□□□□ -0.66
CHMP4A-209ENST00000542700 COL4A5P29400 1685 aa10.92□□□□□ -0.66
CHMP4A-209ENST00000542700 H0YGN5 161 aa10.92□□□□□ -0.66
CHMP4A-209ENST00000542700 CSRNP1Q96S65 589 aa10.92□□□□□ -0.66
CHMP4A-209ENST00000542700 ZNF157P51786 506 aaPredicted RBP10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 RTKN2Q8IZC4 609 aa10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 CNBD1Q8NA66 436 aa10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 CCDC102AQ96A19 550 aa10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 GGNBP2Q9H3C7 697 aa10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 ADARB2Q9NS39 739 aaKnown RBP10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 ZBTB1Q9Y2K1 713 aa10.91□□□□□ -0.66
CHMP4A-209ENST00000542700 RBM27Q9P2N5 1060 aaKnown RBP10.9□□□□□ -0.66
CHMP4A-209ENST00000542700 PAPPA2Q9BXP8 1791 aa10.9□□□□□ -0.67
CHMP4A-209ENST00000542700 RAB3GAP2Q9H2M9 1393 aa10.9□□□□□ -0.67
CHMP4A-209ENST00000542700 TBC1D8O95759 1140 aa10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 HSP90AB1P08238 724 aaKnown RBP10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 SLC10A3P09131 477 aa10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 CYP19A1P11511 503 aaPredicted RBP10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 EN2P19622 333 aaPredicted RBP10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 ST5P78524 1137 aa10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 DLK2Q6UY11 383 aa10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 GPRC5DQ9NZD1 345 aa10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 ROCK2O75116 1388 aaKnown RBP10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 KIF24Q5T7B8 1368 aa10.89□□□□□ -0.67
CHMP4A-209ENST00000542700 CDC37L1Q7L3B6 337 aa10.88□□□□□ -0.67
CHMP4A-209ENST00000542700 EYA1Q99502 592 aa10.88□□□□□ -0.67
CHMP4A-209ENST00000542700 EMILIN1Q9Y6C2 1016 aa10.88□□□□□ -0.67
CHMP4A-209ENST00000542700 CANXP27824 592 aaKnown RBP10.87□□□□□ -0.67
CHMP4A-209ENST00000542700 USP48Q86UV5 1035 aa10.87□□□□□ -0.67
CHMP4A-209ENST00000542700 NFATC2IPQ8NCF5 419 aa10.87□□□□□ -0.67
CHMP4A-209ENST00000542700 GBA2Q9HCG7 927 aaPredicted RBP10.87□□□□□ -0.67
CHMP4A-209ENST00000542700 CEP290O15078 2479 aa10.87□□□□□ -0.67
CHMP4A-209ENST00000542700 SCN7AQ01118 1682 aa10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 RBBP6Q7Z6E9 1792 aaKnown RBP10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 PPM1GO15355 546 aaPredicted RBP10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 NPR1P16066 1061 aa10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 TRIM26Q12899 539 aaPredicted RBP10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 INTS3Q68E01 1043 aaKnown RBP10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 LARGE2Q8N3Y3 721 aa10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 C2orf69Q8N8R5 385 aa10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 PGAP2Q9UHJ9 254 aa10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 ANKRD26Q9UPS8 1709 aa10.86□□□□□ -0.67
CHMP4A-209ENST00000542700 GPR25O00155 361 aa10.85□□□□□ -0.67
CHMP4A-209ENST00000542700 ZNF530Q6P9A1 599 aaPredicted RBP10.85□□□□□ -0.67
CHMP4A-209ENST00000542700 PSMD1Q99460 953 aa10.85□□□□□ -0.67
CHMP4A-209ENST00000542700 PRDM6Q9NQX0 595 aa10.85□□□□□ -0.67
CHMP4A-209ENST00000542700 KIAA0100Q14667 2235 aaKnown RBP10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 ST20-MTHFSA0A0A6YYL1 179 aa10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 FYB1O15117 783 aa10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 MTHFSP49914 203 aa10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 GMPSP49915 693 aaPredicted RBP10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 HIRAP54198 1017 aaPredicted RBP10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 TRPM4Q8TD43 1214 aa10.84□□□□□ -0.67
CHMP4A-209ENST00000542700 ZC3H15Q8WU90 426 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 146.7 ms