RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ERBB4Q15303 1308 aa17.44■□□□□ 0.38
VPS28-211ENST00000530790 ANKRD31Q8N7Z5 1873 aa17.44■□□□□ 0.38
VPS28-211ENST00000530790 KIF6Q6ZMV9 814 aa17.43■□□□□ 0.38
VPS28-211ENST00000530790 CCDC24Q8N4L8 307 aa17.43■□□□□ 0.38
VPS28-211ENST00000530790 TTLL6Q8N841 843 aa17.43■□□□□ 0.38
VPS28-211ENST00000530790 COL11A2P13942 1736 aaPredicted RBP17.43■□□□□ 0.38
VPS28-211ENST00000530790 MYL6BP14649 208 aa17.42■□□□□ 0.38
VPS28-211ENST00000530790 NGEFQ8N5V2 710 aa17.42■□□□□ 0.38
VPS28-211ENST00000530790 TRIM35Q9UPQ4 493 aa17.42■□□□□ 0.38
VPS28-211ENST00000530790 NIP7Q9Y221 180 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS28-211ENST00000530790 C1QTNF8P60827 252 aa17.41■□□□□ 0.38
VPS28-211ENST00000530790 ZNF316A6NFI3 1004 aaPredicted RBP17.4■□□□□ 0.38
VPS28-211ENST00000530790 C9orf131Q5VYM1 1079 aa17.4■□□□□ 0.38
VPS28-211ENST00000530790 ZNF622Q969S3 477 aaKnown RBP eCLIP17.4■□□□□ 0.386e-11■□□□□ 10.3
VPS28-211ENST00000530790 LAS1LQ9Y4W2 734 aaKnown RBP17.4■□□□□ 0.38
VPS28-211ENST00000530790 MAP3K15Q6ZN16 1313 aa17.4■□□□□ 0.38
VPS28-211ENST00000530790 ERVV-1B6SEH8 477 aa17.39■□□□□ 0.37
VPS28-211ENST00000530790 EIF2S2P20042 333 aaKnown RBP17.39■□□□□ 0.37
VPS28-211ENST00000530790 HLFQ16534 295 aa17.39■□□□□ 0.37
VPS28-211ENST00000530790 RNF181Q9P0P0 153 aa17.39■□□□□ 0.37
VPS28-211ENST00000530790 CHL1O00533 1208 aa17.38■□□□□ 0.37
VPS28-211ENST00000530790 TPTE2Q6XPS3 522 aa17.38■□□□□ 0.37
VPS28-211ENST00000530790 TTLL7Q6ZT98 887 aa17.38■□□□□ 0.37
VPS28-211ENST00000530790 FAM177BA6PVY3 158 aa17.37■□□□□ 0.37
VPS28-211ENST00000530790 RASSF7Q02833 373 aa17.37■□□□□ 0.37
VPS28-211ENST00000530790 ZBTB3Q9H5J0 574 aa17.37■□□□□ 0.37
VPS28-211ENST00000530790 APAF1O14727 1248 aa17.36■□□□□ 0.37
VPS28-211ENST00000530790 SRGNP10124 158 aa17.36■□□□□ 0.37
VPS28-211ENST00000530790 GTF2E1P29083 439 aaPredicted RBP17.36■□□□□ 0.37
VPS28-211ENST00000530790 STYK1Q6J9G0 422 aa17.36■□□□□ 0.37
VPS28-211ENST00000530790 CNKSR1Q969H4 720 aa17.36■□□□□ 0.37
VPS28-211ENST00000530790 MASTLQ96GX5 879 aa17.36■□□□□ 0.37
VPS28-211ENST00000530790 NYXQ9GZU5 481 aa17.36■□□□□ 0.37
VPS28-211ENST00000530790 IBTKQ9P2D0 1353 aaPredicted RBP17.36■□□□□ 0.37
VPS28-211ENST00000530790 ANP32CO43423 234 aa17.35■□□□□ 0.37
VPS28-211ENST00000530790 CALD1Q05682 793 aaKnown RBP17.35■□□□□ 0.37
VPS28-211ENST00000530790 NECTIN2Q92692 538 aa17.35■□□□□ 0.37
VPS28-211ENST00000530790 CFAP44Q96MT7 982 aa17.35■□□□□ 0.37
VPS28-211ENST00000530790 C21orf2O43822 256 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 LMNB1P20700 586 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 NUP98P52948 1817 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 PDIA6Q15084 440 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 KRT24Q2M2I5 525 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 PROSER3Q2NL68 480 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 PRPF40BQ6NWY9 871 aaKnown RBP17.34■□□□□ 0.37
VPS28-211ENST00000530790 LRP10Q7Z4F1 713 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 ARFGEF2Q9Y6D5 1785 aa17.34■□□□□ 0.37
VPS28-211ENST00000530790 TNRC6CQ9HCJ0 1690 aaKnown RBP17.33■□□□□ 0.37
VPS28-211ENST00000530790 ABCC12Q96J65 1359 aa17.33■□□□□ 0.36
VPS28-211ENST00000530790 UBN2Q6ZU65 1347 aa17.33■□□□□ 0.36
VPS28-211ENST00000530790 ZC3H4Q9UPT8 1303 aaKnown RBP17.33■□□□□ 0.36
VPS28-211ENST00000530790 SENP3-EIF4A1A0A087X0R7 540 aa17.33■□□□□ 0.36
VPS28-211ENST00000530790 ANXA1P04083 346 aa17.33■□□□□ 0.36
VPS28-211ENST00000530790 HOXB7P09629 217 aa17.33■□□□□ 0.36
VPS28-211ENST00000530790 GPTP24298 496 aa17.33■□□□□ 0.36
VPS28-211ENST00000530790 GIGYF2Q6Y7W6 1299 aaKnown RBP17.33■□□□□ 0.36
VPS28-211ENST00000530790 ZNF219Q9P2Y4 722 aaPredicted RBP17.33■□□□□ 0.36
VPS28-211ENST00000530790 KDM2BQ8NHM5 1336 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 KLRG2A4D1S0 409 aaPredicted RBP17.32■□□□□ 0.36
VPS28-211ENST00000530790 NFKBIEO00221 500 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 NPR1P16066 1061 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 CCDC184Q52MB2 194 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 SOGA3Q5TF21 947 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 HDGFL1Q5TGJ6 251 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 MBIPQ9NS73 344 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 IFT57Q9NWB7 429 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 TIAM2Q8IVF5 1701 aa17.32■□□□□ 0.36
VPS28-211ENST00000530790 RIC1Q4ADV7 1423 aa17.31■□□□□ 0.36
VPS28-211ENST00000530790 CACNA1SQ13698 1873 aa17.31■□□□□ 0.36
VPS28-211ENST00000530790 KIF3CO14782 793 aa17.31■□□□□ 0.36
VPS28-211ENST00000530790 NUTM1Q86Y26 1132 aa17.31■□□□□ 0.36
VPS28-211ENST00000530790 MRS2Q9HD23 443 aa17.31■□□□□ 0.36
VPS28-211ENST00000530790 DDX21Q9NR30 783 aaKnown RBP eCLIP17.31■□□□□ 0.36
VPS28-211ENST00000530790 SBF1O95248 1867 aa17.31■□□□□ 0.36
VPS28-211ENST00000530790 GNAI1P63096 354 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 AIMP1Q12904 312 aaKnown RBP17.3■□□□□ 0.36
VPS28-211ENST00000530790 PARP10Q53GL7 1025 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 COPS6Q7L5N1 327 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 ZNF34Q8IZ26 560 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 XAGE3Q8WTP9 111 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 TAOK3Q9H2K8 898 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 CHPF2Q9P2E5 772 aa17.3■□□□□ 0.36
VPS28-211ENST00000530790 SLX4Q8IY92 1834 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 NTSR2O95665 410 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 ZNF853P0CG23 659 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 ERFEQ4G0M1 354 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 HSP90AB3PQ58FF7 597 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 SUSD4Q5VX71 490 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 DUSP27Q5VZP5 1158 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 PPP1R42Q7Z4L9 355 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 NMRK2Q9NPI5 230 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 FER1L6Q2WGJ9 1857 aa17.29■□□□□ 0.36
VPS28-211ENST00000530790 ANKRD36CQ5JPF3 1778 aa17.28■□□□□ 0.36
VPS28-211ENST00000530790 LTBP3Q9NS15 1303 aa17.28■□□□□ 0.36
VPS28-211ENST00000530790 PRELPP51888 382 aa17.28■□□□□ 0.36
VPS28-211ENST00000530790 CCDC93Q567U6 631 aa17.28■□□□□ 0.36
VPS28-211ENST00000530790 DBF4Q9UBU7 674 aaPredicted RBP17.28■□□□□ 0.36
VPS28-211ENST00000530790 ALDH1B1P30837 517 aa17.27■□□□□ 0.36
VPS28-211ENST00000530790 CRY2Q49AN0 593 aa17.27■□□□□ 0.36
VPS28-211ENST00000530790 RPGRQ92834 1020 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms