RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 RC3H1Q5TC82 1133 aaKnown RBP14.82□□□□□ -0.04
USF1-208ENST00000528768 SMIM5Q71RC9 77 aa14.82□□□□□ -0.04
USF1-208ENST00000528768 NPM2Q86SE8 214 aaKnown RBP14.82□□□□□ -0.04
USF1-208ENST00000528768 BRCA1P38398 1863 aaKnown RBP14.82□□□□□ -0.04
USF1-208ENST00000528768 C4AP0C0L4 1744 aa14.81□□□□□ -0.04
USF1-208ENST00000528768 SLC34A2O95436 690 aa14.81□□□□□ -0.04
USF1-208ENST00000528768 ITPK1Q13572 414 aa14.81□□□□□ -0.04
USF1-208ENST00000528768 RTF1Q92541 710 aaKnown RBP14.81□□□□□ -0.04
USF1-208ENST00000528768 API5Q9BZZ5 524 aaKnown RBP14.81□□□□□ -0.04
USF1-208ENST00000528768 VAMP4O75379 141 aa14.8□□□□□ -0.04
USF1-208ENST00000528768 KCNA3P22001 575 aa14.8□□□□□ -0.04
USF1-208ENST00000528768 RFC4P35249 363 aa14.8□□□□□ -0.04
USF1-208ENST00000528768 HDAC1Q13547 482 aaPredicted RBP14.8□□□□□ -0.04
USF1-208ENST00000528768 TWISTNBQ3B726 338 aaPredicted RBP14.8□□□□□ -0.04
USF1-208ENST00000528768 HSP90AB2PQ58FF8 381 aa14.8□□□□□ -0.04
USF1-208ENST00000528768 GAS2L2Q8NHY3 880 aa14.8□□□□□ -0.04
USF1-208ENST00000528768 MBIPQ9NS73 344 aa14.8□□□□□ -0.04
USF1-208ENST00000528768 DAXXQ9UER7 740 aaPredicted RBP14.8□□□□□ -0.04
USF1-208ENST00000528768 HTATSF1O43719 755 aaKnown RBP14.79□□□□□ -0.04
USF1-208ENST00000528768 GYS1P13807 737 aa14.79□□□□□ -0.04
USF1-208ENST00000528768 VEGFAP15692 232 aaPredicted RBP14.79□□□□□ -0.04
USF1-208ENST00000528768 ZNF831Q5JPB2 1677 aa14.79□□□□□ -0.04
USF1-208ENST00000528768 ASAP1Q9ULH1 1129 aa14.79□□□□□ -0.04
USF1-208ENST00000528768 PCDHB15Q9Y5E8 787 aa14.79□□□□□ -0.04
USF1-208ENST00000528768 NCAPD2Q15021 1401 aa14.78□□□□□ -0.04
USF1-208ENST00000528768 CNTNAP4Q9C0A0 1308 aa14.78□□□□□ -0.04
USF1-208ENST00000528768 IFNL2Q8IZJ0 200 aa14.78□□□□□ -0.04
USF1-208ENST00000528768 MRPL50Q8N5N7 158 aaKnown RBP14.78□□□□□ -0.04
USF1-208ENST00000528768 ARHGEF1Q92888 912 aaKnown RBP14.78□□□□□ -0.04
USF1-208ENST00000528768 RPS6KA4O75676 772 aa14.77□□□□□ -0.05
USF1-208ENST00000528768 TMEM57Q8N5G2 664 aa14.77□□□□□ -0.05
USF1-208ENST00000528768 KDRP35968 1356 aa14.76□□□□□ -0.05
USF1-208ENST00000528768 THUMPD2Q9BTF0 503 aaKnown RBP14.76□□□□□ -0.05
USF1-208ENST00000528768 UPF2Q9HAU5 1272 aaKnown RBP14.76□□□□□ -0.05
USF1-208ENST00000528768 ATG3Q9NT62 314 aa14.76□□□□□ -0.05
USF1-208ENST00000528768 TNNQ9UQP3 1299 aa14.76□□□□□ -0.05
USF1-208ENST00000528768 GLTPD2A6NH11 291 aa14.75□□□□□ -0.05
USF1-208ENST00000528768 CHL1O00533 1208 aa14.75□□□□□ -0.05
USF1-208ENST00000528768 AEBP1Q8IUX7 1158 aa14.75□□□□□ -0.05
USF1-208ENST00000528768 PDZRN3Q9UPQ7 1066 aa14.75□□□□□ -0.05
USF1-208ENST00000528768 KDM6AO15550 1401 aaPredicted RBP14.75□□□□□ -0.05
USF1-208ENST00000528768 ERVV-2B6SEH9 535 aa14.74□□□□□ -0.05
USF1-208ENST00000528768 PHKG2P15735 406 aa14.74□□□□□ -0.05
USF1-208ENST00000528768 LMNB1P20700 586 aa14.74□□□□□ -0.05
USF1-208ENST00000528768 C8orf34Q49A92 452 aa14.74□□□□□ -0.05
USF1-208ENST00000528768 ZBTB40Q9NUA8 1239 aa14.74□□□□□ -0.05
USF1-208ENST00000528768 PCDH10Q9P2E7 1040 aa14.74□□□□□ -0.05
USF1-208ENST00000528768 HSP90AB1P08238 724 aaKnown RBP14.73□□□□□ -0.05
USF1-208ENST00000528768 CHMP4AQ9BY43 222 aa14.73□□□□□ -0.05
USF1-208ENST00000528768 PRDM10Q9NQV6 1147 aa14.73□□□□□ -0.05
USF1-208ENST00000528768 SBF1O95248 1867 aa14.73□□□□□ -0.05
USF1-208ENST00000528768 DLG5Q8TDM6 1919 aa14.72□□□□□ -0.05
USF1-208ENST00000528768 SOS1Q07889 1333 aaPredicted RBP14.72□□□□□ -0.05
USF1-208ENST00000528768 SKAP1Q86WV1 359 aa14.72□□□□□ -0.05
USF1-208ENST00000528768 CREBZFQ9NS37 354 aa14.72□□□□□ -0.05
USF1-208ENST00000528768 BABAM1Q9NWV8 329 aa14.72□□□□□ -0.05
USF1-208ENST00000528768 DPY19L2Q6NUT2 758 aa14.71□□□□□ -0.05
USF1-208ENST00000528768 TSPYL6Q8N831 410 aa14.71□□□□□ -0.05
USF1-208ENST00000528768 C8orf58Q8NAV2 365 aa14.71□□□□□ -0.05
USF1-208ENST00000528768 GCC1Q96CN9 775 aa14.71□□□□□ -0.05
USF1-208ENST00000528768 EYA1Q99502 592 aa14.71□□□□□ -0.05
USF1-208ENST00000528768 RBM42Q9BTD8 480 aaKnown RBP14.71□□□□□ -0.05
USF1-208ENST00000528768 ABCC4O15439 1325 aa14.7□□□□□ -0.06
USF1-208ENST00000528768 PTPRCP08575 1304 aa14.7□□□□□ -0.06
USF1-208ENST00000528768 COL5A3P25940 1745 aaPredicted RBP14.7□□□□□ -0.06
USF1-208ENST00000528768 ELL2O00472 640 aaPredicted RBP14.7□□□□□ -0.06
USF1-208ENST00000528768 EIF5BO60841 1220 aaKnown RBP14.7□□□□□ -0.06
USF1-208ENST00000528768 DCTN1Q14203 1278 aa14.7□□□□□ -0.06
USF1-208ENST00000528768 SMC5Q8IY18 1101 aa14.7□□□□□ -0.06
USF1-208ENST00000528768 USP42Q9H9J4 1324 aaKnown RBP14.69□□□□□ -0.06
USF1-208ENST00000528768 GNAT3A8MTJ3 354 aa14.69□□□□□ -0.06
USF1-208ENST00000528768 MTHFSDQ2M296 383 aaKnown RBP14.69□□□□□ -0.06
USF1-208ENST00000528768 MCM10Q7L590 875 aa14.69□□□□□ -0.06
USF1-208ENST00000528768 SLC4A9Q96Q91 983 aa14.69□□□□□ -0.06
USF1-208ENST00000528768 TSPYL4Q9UJ04 414 aa14.69□□□□□ -0.06
USF1-208ENST00000528768 ZBTB7BO15156 539 aaPredicted RBP14.68□□□□□ -0.06
USF1-208ENST00000528768 CHRNA5P30532 468 aa14.68□□□□□ -0.06
USF1-208ENST00000528768 AIDAQ96BJ3 306 aa14.68□□□□□ -0.06
USF1-208ENST00000528768 CTCFP49711 727 aaPredicted RBP14.67□□□□□ -0.06
USF1-208ENST00000528768 DDR1Q08345 913 aa14.67□□□□□ -0.06
USF1-208ENST00000528768 POLRMTO00411 1230 aaKnown RBP14.66□□□□□ -0.06
USF1-208ENST00000528768 TM4SF1P30408 202 aa14.66□□□□□ -0.06
USF1-208ENST00000528768 CRKLP46109 303 aaKnown RBP14.66□□□□□ -0.06
USF1-208ENST00000528768 RASSF7Q02833 373 aa14.66□□□□□ -0.06
USF1-208ENST00000528768 BECN1Q14457 450 aa14.66□□□□□ -0.06
USF1-208ENST00000528768 RTL5Q5HYW3 569 aaPredicted RBP14.66□□□□□ -0.06
USF1-208ENST00000528768 TTLL6Q8N841 843 aa14.66□□□□□ -0.06
USF1-208ENST00000528768 STK31Q9BXU1 1019 aa14.66□□□□□ -0.06
USF1-208ENST00000528768 VIRMAQ69YN4 1812 aaKnown RBP14.65□□□□□ -0.06
USF1-208ENST00000528768 ZPR1O75312 459 aa14.65□□□□□ -0.06
USF1-208ENST00000528768 NUCB1Q02818 461 aa14.65□□□□□ -0.06
USF1-208ENST00000528768 INTS3Q68E01 1043 aaKnown RBP14.65□□□□□ -0.06
USF1-208ENST00000528768 CHADLQ6NUI6 762 aa14.65□□□□□ -0.06
USF1-208ENST00000528768 FOXN1O15353 648 aa14.64□□□□□ -0.07
USF1-208ENST00000528768 CABP4P57796 275 aa14.64□□□□□ -0.07
USF1-208ENST00000528768 CNTNAP1P78357 1384 aa14.63□□□□□ -0.07
USF1-208ENST00000528768 TAF7Q15545 349 aaPredicted RBP14.63□□□□□ -0.07
USF1-208ENST00000528768 AMOTQ4VCS5 1084 aa14.63□□□□□ -0.07
USF1-208ENST00000528768 CCDC30Q5VVM6 783 aa14.63□□□□□ -0.07
USF1-208ENST00000528768 CHD1LQ86WJ1 897 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms