RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 HSH2DQ96JZ2 352 aa10.74□□□□□ -0.69
PCF11-202ENST00000528336 C16orf46Q6P387 395 aa10.73□□□□□ -0.69
PCF11-202ENST00000528336 SUSD3Q96L08 255 aa10.73□□□□□ -0.69
PCF11-202ENST00000528336 LRFN2Q9ULH4 789 aa10.73□□□□□ -0.69
PCF11-202ENST00000528336 GPR25O00155 361 aa10.72□□□□□ -0.69
PCF11-202ENST00000528336 BRD1O95696 1058 aa10.72□□□□□ -0.69
PCF11-202ENST00000528336 GTF3C2Q8WUA4 911 aaPredicted RBP10.72□□□□□ -0.69
PCF11-202ENST00000528336 ZCCHC2Q9C0B9 1178 aaKnown RBP10.72□□□□□ -0.69
PCF11-202ENST00000528336 ABL1P00519 1130 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 ARID4AP29374 1257 aaPredicted RBP10.71□□□□□ -0.69
PCF11-202ENST00000528336 LBRQ14739 615 aaKnown RBP10.71□□□□□ -0.69
PCF11-202ENST00000528336 C11orf91Q3C1V1 193 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 FOXR1Q6PIV2 292 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 NLRP8Q86W28 1048 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 NANOS1Q8WY41 292 aaKnown RBP10.71□□□□□ -0.69
PCF11-202ENST00000528336 MYO19Q96H55 970 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 GMCL1Q96IK5 515 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 ANKIB1Q9P2G1 1089 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 MTMR7Q9Y216 660 aa10.71□□□□□ -0.69
PCF11-202ENST00000528336 GPC6Q9Y625 555 aaPredicted RBP10.71□□□□□ -0.69
PCF11-202ENST00000528336 ERBB4Q15303 1308 aa10.7□□□□□ -0.7
PCF11-202ENST00000528336 GPR161Q8N6U8 529 aaKnown RBP10.7□□□□□ -0.7
PCF11-202ENST00000528336 ATXN7O15265 892 aaPredicted RBP10.69□□□□□ -0.7
PCF11-202ENST00000528336 NFX1Q12986 1120 aaKnown RBP10.69□□□□□ -0.7
PCF11-202ENST00000528336 AEBP1Q8IUX7 1158 aa10.69□□□□□ -0.7
PCF11-202ENST00000528336 IFT43Q96FT9 208 aa10.69□□□□□ -0.7
PCF11-202ENST00000528336 ANO2Q9NQ90 1003 aa10.69□□□□□ -0.7
PCF11-202ENST00000528336 BCS1LQ9Y276 419 aa10.69□□□□□ -0.7
PCF11-202ENST00000528336 MTMR3Q13615 1198 aa10.68□□□□□ -0.7
PCF11-202ENST00000528336 UBAP2LQ14157 1087 aaKnown RBP10.68□□□□□ -0.7
PCF11-202ENST00000528336 FIGNL1Q6PIW4 674 aa10.68□□□□□ -0.7
PCF11-202ENST00000528336 IRF7Q92985 503 aa10.68□□□□□ -0.7
PCF11-202ENST00000528336 TRERF1Q96PN7 1200 aa10.68□□□□□ -0.7
PCF11-202ENST00000528336 PCDHGC4Q9Y5F7 938 aa10.68□□□□□ -0.7
PCF11-202ENST00000528336 DNMT3AQ9Y6K1 912 aaPredicted RBP10.68□□□□□ -0.7
PCF11-202ENST00000528336 DCDC2BA2VCK2 349 aa10.67□□□□□ -0.7
PCF11-202ENST00000528336 KHNYNO15037 678 aaKnown RBP10.67□□□□□ -0.7
PCF11-202ENST00000528336 SERPINB4P48594 390 aa10.67□□□□□ -0.7
PCF11-202ENST00000528336 HIF1AQ16665 826 aa10.67□□□□□ -0.7
PCF11-202ENST00000528336 ABHD17AQ96GS6 310 aa10.67□□□□□ -0.7
PCF11-202ENST00000528336 CEP63Q96MT8 703 aa10.67□□□□□ -0.7
PCF11-202ENST00000528336 TNFRSF10BO14763 440 aa10.66□□□□□ -0.7
PCF11-202ENST00000528336 BNIP3LO60238 219 aa10.66□□□□□ -0.7
PCF11-202ENST00000528336 WFS1O76024 890 aa10.66□□□□□ -0.7
PCF11-202ENST00000528336 BRD2P25440 801 aaKnown RBP10.66□□□□□ -0.7
PCF11-202ENST00000528336 ZNF211Q13398 564 aaPredicted RBP10.66□□□□□ -0.7
PCF11-202ENST00000528336 CCER1Q8TC90 406 aaPredicted RBP10.66□□□□□ -0.7
PCF11-202ENST00000528336 TGFBR3LH3BV60 316 aa10.65□□□□□ -0.7
PCF11-202ENST00000528336 BTLAQ7Z6A9 289 aa10.65□□□□□ -0.7
PCF11-202ENST00000528336 TXNDC2Q86VQ3 553 aa10.65□□□□□ -0.7
PCF11-202ENST00000528336 STIM2Q9P246 746 aa10.65□□□□□ -0.7
PCF11-202ENST00000528336 MICAL2O94851 1124 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 VSIG8P0DPA2 414 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 FAM26DQ5JW98 314 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 SAMD5Q5TGI4 173 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 TREML4Q6UXN2 200 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 TREML1Q86YW5 311 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 HELQQ8TDG4 1101 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 PHF24Q9UPV7 400 aa10.64□□□□□ -0.71
PCF11-202ENST00000528336 MAPTP10636 758 aaKnown RBP10.63□□□□□ -0.71
PCF11-202ENST00000528336 TNP2Q05952 138 aa10.63□□□□□ -0.71
PCF11-202ENST00000528336 ETFBKMTQ8IXQ9 262 aa10.63□□□□□ -0.71
PCF11-202ENST00000528336 COL25A1Q9BXS0 654 aaPredicted RBP10.63□□□□□ -0.71
PCF11-202ENST00000528336 NDFIP2Q9NV92 336 aa10.63□□□□□ -0.71
PCF11-202ENST00000528336 KCNA1Q09470 495 aa10.62□□□□□ -0.71
PCF11-202ENST00000528336 LCE2CQ5TA81 110 aa10.62□□□□□ -0.71
PCF11-202ENST00000528336 IER5Q5VY09 327 aa10.62□□□□□ -0.71
PCF11-202ENST00000528336 CFHR5Q9BXR6 569 aa10.62□□□□□ -0.71
PCF11-202ENST00000528336 BRD7Q9NPI1 651 aa10.62□□□□□ -0.71
PCF11-202ENST00000528336 DMGDHQ9UI17 866 aaKnown RBP10.62□□□□□ -0.71
PCF11-202ENST00000528336 ATXN7L1Q9ULK2 861 aaPredicted RBP10.62□□□□□ -0.71
PCF11-202ENST00000528336 ZBTB39O15060 712 aa10.61□□□□□ -0.71
PCF11-202ENST00000528336 FAM157BP0CG42 384 aa10.61□□□□□ -0.71
PCF11-202ENST00000528336 GMPRP36959 345 aa10.61□□□□□ -0.71
PCF11-202ENST00000528336 IDH3AP50213 366 aa10.61□□□□□ -0.71
PCF11-202ENST00000528336 FKBP4Q02790 459 aaKnown RBP eCLIP10.61□□□□□ -0.71
PCF11-202ENST00000528336 TYRO3Q06418 890 aa10.61□□□□□ -0.71
PCF11-202ENST00000528336 SFSWAPQ12872 951 aaKnown RBP10.61□□□□□ -0.71
PCF11-202ENST00000528336 IVNS1ABPQ9Y6Y0 642 aa10.61□□□□□ -0.71
PCF11-202ENST00000528336 CD33P20138 364 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 FGFR3P22607 806 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 CTBSQ01459 385 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 GAS6Q14393 721 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 RNFT1Q5M7Z0 435 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 KCTD17Q8N5Z5 321 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 STRN4Q9NRL3 753 aa10.6□□□□□ -0.71
PCF11-202ENST00000528336 H3BRB1 525 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 OPLAHO14841 1288 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 MPSTP25325 297 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 ABTB2Q8N961 1025 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 CNTNAP3BQ96NU0 1288 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 CNTNAP3Q9BZ76 1288 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 TUT1Q9H6E5 874 aaKnown RBP10.59□□□□□ -0.71
PCF11-202ENST00000528336 HCN2Q9UL51 889 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 GNEQ9Y223 722 aaKnown RBP10.59□□□□□ -0.71
PCF11-202ENST00000528336 USP20Q9Y2K6 914 aa10.59□□□□□ -0.71
PCF11-202ENST00000528336 EFSO43281 561 aa10.58□□□□□ -0.72
PCF11-202ENST00000528336 ICMTO60725 284 aa10.58□□□□□ -0.72
PCF11-202ENST00000528336 MX2P20592 715 aa10.58□□□□□ -0.72
PCF11-202ENST00000528336 INPP5BP32019 993 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms