RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 COX20Q5RI15 118 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 ATCAYQ86WG3 371 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 MORC4Q8TE76 937 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 GPRASP2Q96D09 838 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 CSRNP1Q96S65 589 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 UNC93B1Q9H1C4 597 aa7.45□□□□□ -1.22
USP47-204ENST00000525078 TSPAN10Q9H1Z9 355 aaPredicted RBP7.45□□□□□ -1.22
USP47-204ENST00000525078 SLKQ9H2G2 1235 aaPredicted RBP7.45□□□□□ -1.22
USP47-204ENST00000525078 ENPP3O14638 875 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 TNFRSF10BO14763 440 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 GJA8P48165 433 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 DNM1Q05193 864 aaKnown RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 PTPN12Q05209 780 aaKnown RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 NBPF6Q5VWK0 638 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 TMED8Q6PL24 325 aaPredicted RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 BPHLQ86WA6 291 aaPredicted RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 CCDC24Q8N4L8 307 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 LRCH3Q96II8 777 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 NBPF4Q96M43 638 aa7.44□□□□□ -1.22
USP47-204ENST00000525078 SRPK1Q96SB4 655 aaKnown RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 MAGEC2Q9UBF1 373 aaPredicted RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 G3BP2Q9UN86 482 aaKnown RBP7.44□□□□□ -1.22
USP47-204ENST00000525078 TMEM229AB2RXF0 380 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 LCE2BO14633 110 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 U2SURPO15042 1029 aaKnown RBP7.43□□□□□ -1.22
USP47-204ENST00000525078 S100BP04271 92 aaPredicted RBP7.43□□□□□ -1.22
USP47-204ENST00000525078 PLEKHG6Q3KR16 790 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 MSS51Q4VC12 460 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 TICAM2Q86XR7 235 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 SEPT12Q8IYM1 358 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 SERTAD1Q9UHV2 236 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 FAN1Q9Y2M0 1017 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 PCDHB3Q9Y5E6 796 aa7.43□□□□□ -1.22
USP47-204ENST00000525078 A0A1W2PRU2 124 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 GDF10P55107 478 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 CHMP4BP1P59074 171 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 SH3RF1Q7Z6J0 888 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 GJD3Q8N144 294 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 MKL1Q969V6 931 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 CFHR5Q9BXR6 569 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 TRIM55Q9BYV6 548 aa7.42□□□□□ -1.22
USP47-204ENST00000525078 TSR3Q9UJK0 312 aaKnown RBP7.42□□□□□ -1.22
USP47-204ENST00000525078 V9GY48 417 aaPredicted RBP7.42□□□□□ -1.22
USP47-204ENST00000525078 CCDC194A0A1B0GVG4 234 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 ZBTB39O15060 712 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 NEFLP07196 543 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 ORC1Q13415 861 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 TTC16Q8NEE8 873 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 EDEM1Q92611 657 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 RNPC3Q96LT9 517 aaKnown RBP7.41□□□□□ -1.22
USP47-204ENST00000525078 IRF2BPLQ9H1B7 796 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 PRDM16Q9HAZ2 1276 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.41□□□□□ -1.22
USP47-204ENST00000525078 HPS5Q9UPZ3 1129 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 PRKAB1Q9Y478 270 aa7.41□□□□□ -1.22
USP47-204ENST00000525078 EIF1AYO14602 144 aaKnown RBP7.4□□□□□ -1.22
USP47-204ENST00000525078 PCSK2P16519 638 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 MMP16P51512 607 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 NFX1Q12986 1120 aaKnown RBP7.4□□□□□ -1.22
USP47-204ENST00000525078 SERINC3Q13530 473 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 TAF1CQ15572 869 aaPredicted RBP7.4□□□□□ -1.22
USP47-204ENST00000525078 NKX2-3Q8TAU0 364 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 CCDC136Q96JN2 1154 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 SPSB2Q99619 263 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 PRDM9Q9NQV7 894 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 DDX56Q9NY93 547 aaKnown RBP7.4□□□□□ -1.22
USP47-204ENST00000525078 SIRPGQ9P1W8 387 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 CDV3Q9UKY7 258 aaKnown RBP7.4□□□□□ -1.22
USP47-204ENST00000525078 CHMP3Q9Y3E7 222 aa7.4□□□□□ -1.22
USP47-204ENST00000525078 USP31Q70CQ4 1352 aa7.39□□□□□ -1.23
USP47-204ENST00000525078 SCTRP47872 440 aa7.39□□□□□ -1.23
USP47-204ENST00000525078 TBCELQ5QJ74 424 aa7.39□□□□□ -1.23
USP47-204ENST00000525078 CCAR1Q8IX12 1150 aaKnown RBP7.39□□□□□ -1.23
USP47-204ENST00000525078 FAM160A2Q8N612 972 aaPredicted RBP7.39□□□□□ -1.23
USP47-204ENST00000525078 BAP1Q92560 729 aa7.39□□□□□ -1.23
USP47-204ENST00000525078 FOXJ1Q92949 421 aa7.39□□□□□ -1.23
USP47-204ENST00000525078 C2orf49Q9BVC5 232 aaPredicted RBP7.39□□□□□ -1.23
USP47-204ENST00000525078 STAU1O95793 577 aaKnown RBP7.38□□□□□ -1.23
USP47-204ENST00000525078 PDGFAP04085 211 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 SCNN1DP51172 638 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 PPP4CP60510 307 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 LAPTM4AQ15012 233 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 LINC01559Q495D7 138 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.38□□□□□ -1.23
USP47-204ENST00000525078 PTCRAQ6ISU1 281 aaPredicted RBP7.38□□□□□ -1.23
USP47-204ENST00000525078 ANKS3Q6ZW76 656 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 NGLY1Q96IV0 654 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 C12orf49Q9H741 205 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 QTRT2Q9H974 415 aaKnown RBP7.38□□□□□ -1.23
USP47-204ENST00000525078 ZNF408Q9H9D4 720 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 GABBR1Q9UBS5 961 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 LRFN2Q9ULH4 789 aa7.38□□□□□ -1.23
USP47-204ENST00000525078 R3HCC1Q9Y3T6 440 aaKnown RBP7.38□□□□□ -1.23
USP47-204ENST00000525078 OPLAHO14841 1288 aa7.37□□□□□ -1.23
USP47-204ENST00000525078 GFRA3O60609 400 aa7.37□□□□□ -1.23
USP47-204ENST00000525078 CDC45O75419 566 aa7.37□□□□□ -1.23
USP47-204ENST00000525078 INHAP05111 366 aa7.37□□□□□ -1.23
USP47-204ENST00000525078 EPHA4P54764 986 aa7.37□□□□□ -1.23
USP47-204ENST00000525078 C8orf34Q49A92 452 aa7.37□□□□□ -1.23
USP47-204ENST00000525078 PLEKHG4Q58EX7 1191 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms