RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 NAIF1Q69YI7 327 aaPredicted RBP14.08□□□□□ -0.16
LIMCH1-213ENST00000511496 RILPL2Q969X0 211 aa14.08□□□□□ -0.16
LIMCH1-213ENST00000511496 DCTPP1Q9H773 170 aa14.08□□□□□ -0.16
LIMCH1-213ENST00000511496 FUT8Q9BYC5 575 aa14.08□□□□□ -0.16
LIMCH1-213ENST00000511496 UNC13AQ9UPW8 1703 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 NOS1P29475 1434 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 TMPOP42166 694 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 CCDC158Q5M9N0 1113 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 GBP6Q6ZN66 633 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 FAN1Q9Y2M0 1017 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 NESP48681 1621 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 A0A087WUV0 522 aaPredicted RBP14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 A0A087WWV3 80 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 TADA3O75528 432 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 HNRNPH1P31943 449 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 TTC6Q86TZ1 520 aa14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 TFIP11Q9UBB9 837 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-213ENST00000511496 N4BP1O75113 896 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 CALRP27797 417 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 MAP9Q49MG5 647 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 KAT2BQ92831 832 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 PLCD4Q9BRC7 762 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 ZSWIM4Q9H7M6 989 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 LRRC31Q6UY01 552 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 PRPF38AQ8NAV1 312 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 MKRN1Q9UHC7 482 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 SCAF11Q99590 1463 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 PARD6BQ9BYG5 372 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 TRIM35Q9UPQ4 493 aa14.06□□□□□ -0.16
LIMCH1-213ENST00000511496 LONRF2Q1L5Z9 754 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 ZNF428Q96B54 188 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 EFCAB8A8MWE9 144 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 BICC1Q9H694 974 aaKnown RBP14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 ATP10AO60312 1499 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 BICD2Q8TD16 824 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 CCDC102AQ96A19 550 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 ESYT1Q9BSJ8 1104 aa14.05□□□□□ -0.16
LIMCH1-213ENST00000511496 EIF4G3O43432 1585 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 MPHOSPH10O00566 681 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 ETF1P62495 437 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 CCDC83Q8IWF9 413 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 RBM28Q9NW13 759 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 STAG3Q9UJ98 1225 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 GJB2P29033 226 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 CDC25BP30305 580 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 OS9Q13438 667 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 NBPF6Q5VWK0 638 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 NBPF4Q96M43 638 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 AKAP2Q9Y2D5 859 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 ABCC11Q96J66 1382 aa14.04□□□□□ -0.16
LIMCH1-213ENST00000511496 GNAI3P08754 354 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 PAX7P23759 505 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 USP8P40818 1118 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 SETQ01105 290 aaPredicted RBP14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 MRFAP1L1Q96HT8 127 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 RTL1A6NKG5 1358 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 SRGAP3O43295 1099 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 ALDH1L2Q3SY69 923 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 WWC2Q6AWC2 1192 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 IQSEC2Q5JU85 1478 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 CPP00450 1065 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 KRT85P78386 507 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 APOBRQ0VD83 1088 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 CPLX2Q6PUV4 134 aaKnown RBP14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 CNNM3Q8NE01 707 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 MTMR6Q9Y217 621 aa14.03□□□□□ -0.16
LIMCH1-213ENST00000511496 NR1I2O75469 434 aa14.02□□□□□ -0.16
LIMCH1-213ENST00000511496 TRDNQ13061 729 aa14.02□□□□□ -0.16
LIMCH1-213ENST00000511496 C11orf57Q6ZUT1 292 aaPredicted RBP14.02□□□□□ -0.16
LIMCH1-213ENST00000511496 GPR161Q8N6U8 529 aaKnown RBP14.02□□□□□ -0.16
LIMCH1-213ENST00000511496 RGS12O14924 1447 aa14.02□□□□□ -0.16
LIMCH1-213ENST00000511496 AATKQ6ZMQ8 1374 aa14.02□□□□□ -0.16
LIMCH1-213ENST00000511496 CPA1P15085 419 aa14.02□□□□□ -0.17
LIMCH1-213ENST00000511496 LRRFIP1Q32MZ4 808 aaKnown RBP14.02□□□□□ -0.17
LIMCH1-213ENST00000511496 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.02□□□□□ -0.17
LIMCH1-213ENST00000511496 MIEF2Q96C03 454 aa14.02□□□□□ -0.17
LIMCH1-213ENST00000511496 IFIT2P09913 472 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 AK2P54819 239 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 HSP90B2PQ58FF3 399 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 TMC6Q7Z403 805 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 RABEP2Q9H5N1 569 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 UHRF1BP1LA0JNW5 1464 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 NRDCO43847 1150 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 SFPQP23246 707 aaKnown RBP eCLIP14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 SSR1P43307 286 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 NBPF11Q86T75 865 aa14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 N4BP2L2Q92802 583 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 GNL3LQ9NVN8 582 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-213ENST00000511496 ATP2B2Q01814 1243 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 KCNV1Q6PIU1 500 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 SUGCTQ9HAC7 445 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 EIF5P55010 431 aaKnown RBP14□□□□□ -0.17
LIMCH1-213ENST00000511496 ANAPC15P60006 121 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 TSPYL6Q8N831 410 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 JMYQ8N9B5 988 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 PPFIA4O75335 1185 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 GSDMDP57764 484 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 CTCFLQ8NI51 663 aaPredicted RBP14□□□□□ -0.17
LIMCH1-213ENST00000511496 SPATA32Q96LK8 384 aa14□□□□□ -0.17
LIMCH1-213ENST00000511496 SLC12A5Q9H2X9 1139 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms