RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-208ENST00000494654 MBD3O95983 291 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 IGHDP01880 384 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 SLFN14P0C7P3 912 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 HDGFP51858 240 aaKnown RBP3.32□□□□□ -1.88
MDC1-208ENST00000494654 PIP4K2BP78356 416 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 CDCA8Q53HL2 280 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 MORN1Q5T089 497 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 SCUBE3Q8IX30 993 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 BRMS1Q9HCU9 246 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 RRP7BPQ9NSQ0 103 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 PLA2G2EQ9NZK7 142 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 LIMD1Q9UGP4 676 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 PDZRN3Q9UPQ7 1066 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 PCDHB3Q9Y5E6 796 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 PCDHB15Q9Y5E8 787 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 DDX49Q9Y6V7 483 aaKnown RBP3.32□□□□□ -1.88
MDC1-208ENST00000494654 ABCC11Q96J66 1382 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 TROQ12816 1431 aaPredicted RBP3.32□□□□□ -1.88
MDC1-208ENST00000494654 CD109Q6YHK3 1445 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 ADGRB1O14514 1584 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 CAMSAP1Q5T5Y3 1602 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 ADAMTSL3P82987 1691 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 FER1L4A9Z1Z3 1794 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 MYH2Q9UKX2 1941 aa3.32□□□□□ -1.88
MDC1-208ENST00000494654 MYH7P12883 1935 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 SIGLEC1Q9BZZ2 1709 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 ARHGEF40Q8TER5 1519 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 C9orf84Q5VXU9 1444 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 SSH2Q76I76 1423 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 TRAPPC8Q9Y2L5 1435 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 PER1O15534 1290 aaPredicted RBP3.31□□□□□ -1.88
MDC1-208ENST00000494654 HOXA2O43364 376 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 KDM4AO75164 1064 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 TPM3P06753 285 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 CAPN2P17655 700 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 U2AF2P26368 475 aaKnown RBP eCLIP3.31□□□□□ -1.88
MDC1-208ENST00000494654 SSFA2P28290 1259 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 KCNJ4P48050 445 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 NUCB2P80303 420 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 CHAF1AQ13111 956 aaPredicted RBP3.31□□□□□ -1.88
MDC1-208ENST00000494654 WDR43Q15061 677 aaKnown RBP eCLIP3.31□□□□□ -1.88
MDC1-208ENST00000494654 UVSSAQ2YD98 709 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 MUM1L1Q5H9M0 696 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 KRT222Q8N1A0 295 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 CEP120Q8N960 986 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 FAM184AQ8NB25 1140 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 PROCA1Q8NCQ7 364 aaPredicted RBP3.31□□□□□ -1.88
MDC1-208ENST00000494654 EMID1Q96A84 441 aaPredicted RBP3.31□□□□□ -1.88
MDC1-208ENST00000494654 CARD11Q9BXL7 1154 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 TRIM34Q9BYJ4 488 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 RBSNQ9H1K0 784 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 LMBRD1Q9NUN5 540 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 POLR3EQ9NVU0 708 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 CTNNA3Q9UI47 895 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 DDX41Q9UJV9 622 aaKnown RBP3.31□□□□□ -1.88
MDC1-208ENST00000494654 CHD4Q14839 1912 aa3.31□□□□□ -1.88
MDC1-208ENST00000494654 MYO5BQ9ULV0 1848 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 NRKQ7Z2Y5 1582 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 UGGT1Q9NYU2 1555 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 LRRC7Q96NW7 1537 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 GPATCH8Q9UKJ3 1502 aaKnown RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 ERVK-7P63135 1459 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 PTCH1Q13635 1447 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 POLR3AO14802 1390 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 SENP3-EIF4A1A0A087X0R7 540 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 SMTNL1A8MU46 457 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 UBAP1LF5GYI3 381 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 ZPR1O75312 459 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 REC8O95072 547 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 ITGBL1O95965 494 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 PTMAP06454 111 aaKnown RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 HSP90B1P14625 803 aaKnown RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 NCBP1Q09161 790 aaKnown RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 TERF2Q15554 542 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 QPCTQ16769 361 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 SLFNL1Q499Z3 407 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 PLA2G2CQ5R387 149 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 MYSM1Q5VVJ2 828 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 CAVIN1Q6NZI2 390 aaKnown RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 SULF1Q8IWU6 871 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 HOMEZQ8IX15 550 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 FAM160A2Q8N612 972 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 ZNF397Q8NF99 534 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 CABLES1Q8TDN4 633 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 SYAP1Q96A49 352 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 THAP11Q96EK4 314 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 MYCBPQ99417 103 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 POLR3GLQ9BT43 218 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 CHMP4AQ9BY43 222 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 RWDD1Q9H446 243 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 FAM53CQ9NYF3 392 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 FEZ2Q9UHY8 353 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 MORC2Q9Y6X9 1032 aaPredicted RBP3.3□□□□□ -1.88
MDC1-208ENST00000494654 MON2Q7Z3U7 1717 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 LRRC37A3O60309 1634 aa3.3□□□□□ -1.88
MDC1-208ENST00000494654 MED1Q15648 1581 aaPredicted RBP3.29□□□□□ -1.88
MDC1-208ENST00000494654 COL3A1P02461 1466 aaPredicted RBP3.29□□□□□ -1.88
MDC1-208ENST00000494654 ZNF518AQ6AHZ1 1483 aa3.29□□□□□ -1.88
MDC1-208ENST00000494654 NOS1P29475 1434 aa3.29□□□□□ -1.88
MDC1-208ENST00000494654 CARMIL2Q6F5E8 1435 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms