RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-208ENST00000494654 AEBP2Q6ZN18 517 aaPredicted RBP8.34□□□□□ -1.07
MDC1-208ENST00000494654 CHIC1Q5VXU3 224 aa8.01□□□□□ -1.13
MDC1-208ENST00000494654 PHF23Q9BUL5 403 aaPredicted RBP7.14□□□□□ -1.27
MDC1-208ENST00000494654 SENP3Q9H4L4 574 aaPredicted RBP6.9□□□□□ -1.3
MDC1-208ENST00000494654 FOXD1Q16676 465 aa6.53□□□□□ -1.36
MDC1-208ENST00000494654 PLPPR3Q6T4P5 718 aa6.43□□□□□ -1.38
MDC1-208ENST00000494654 PPP6R1Q9UPN7 881 aa6.33□□□□□ -1.4
MDC1-208ENST00000494654 ADRA2BP18089 450 aa6.3□□□□□ -1.4
MDC1-208ENST00000494654 PIAS4Q8N2W9 510 aaPredicted RBP6.11□□□□□ -1.43
MDC1-208ENST00000494654 MSH5O43196 834 aa5.88□□□□□ -1.47
MDC1-208ENST00000494654 MAPK8IP2Q13387 824 aaPredicted RBP5.76□□□□□ -1.49
MDC1-208ENST00000494654 PPP4R3CPQ6ZMV5 832 aa5.73□□□□□ -1.49
MDC1-208ENST00000494654 KCNA4P22459 653 aa5.65□□□□□ -1.5
MDC1-208ENST00000494654 DMRT2Q9Y5R5 561 aa5.55□□□□□ -1.52
MDC1-208ENST00000494654 SCAF1Q9H7N4 1312 aaKnown RBP5.54□□□□□ -1.52
MDC1-208ENST00000494654 NPM3O75607 178 aaKnown RBP5.52□□□□□ -1.53
MDC1-208ENST00000494654 POTEDQ86YR6 584 aa5.52□□□□□ -1.53
MDC1-208ENST00000494654 CNKSR2Q8WXI2 1034 aa5.51□□□□□ -1.53
MDC1-208ENST00000494654 NCBP3Q53F19 620 aaKnown RBP5.45□□□□□ -1.54
MDC1-208ENST00000494654 HOXD11P31277 338 aaPredicted RBP5.42□□□□□ -1.54
MDC1-208ENST00000494654 RNF216Q9NWF9 866 aaPredicted RBP5.41□□□□□ -1.54
MDC1-208ENST00000494654 DCAF8L1A6NGE4 600 aa5.34□□□□□ -1.55
MDC1-208ENST00000494654 SLC4A1APQ9BWU0 796 aaKnown RBP5.29□□□□□ -1.56
MDC1-208ENST00000494654 SLC4A2P04920 1241 aa5.26□□□□□ -1.57
MDC1-208ENST00000494654 ZBTB22O15209 634 aa5.24□□□□□ -1.57
MDC1-208ENST00000494654 DNAJC5BQ9UF47 199 aa5.22□□□□□ -1.57
MDC1-208ENST00000494654 EHMT2Q96KQ7 1210 aa5.2□□□□□ -1.58
MDC1-208ENST00000494654 CSRNP3Q8WYN3 585 aa5.15□□□□□ -1.59
MDC1-208ENST00000494654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.15□□□□□ -1.59
MDC1-208ENST00000494654 U3KPZ7 1027 aaPredicted RBP5.14□□□□□ -1.59
MDC1-208ENST00000494654 RNF39Q9H2S5 420 aa5.12□□□□□ -1.59
MDC1-208ENST00000494654 FOXD4L1Q9NU39 408 aa5.1□□□□□ -1.59
MDC1-208ENST00000494654 ATF5Q9Y2D1 282 aaPredicted RBP5.05□□□□□ -1.6
MDC1-208ENST00000494654 SPINK5Q9NQ38 1064 aaPredicted RBP5.04□□□□□ -1.6
MDC1-208ENST00000494654 MYCNP04198 464 aaPredicted RBP5.01□□□□□ -1.61
MDC1-208ENST00000494654 CACNB1Q02641 598 aaPredicted RBP4.98□□□□□ -1.61
MDC1-208ENST00000494654 C1QBPQ07021 282 aaKnown RBP4.98□□□□□ -1.61
MDC1-208ENST00000494654 NISCHQ9Y2I1 1504 aa4.97□□□□□ -1.61
MDC1-208ENST00000494654 CAPN15O75808 1086 aa4.94□□□□□ -1.62
MDC1-208ENST00000494654 TRHP20396 242 aaPredicted RBP4.94□□□□□ -1.62
MDC1-208ENST00000494654 ABCB7O75027 752 aa4.92□□□□□ -1.62
MDC1-208ENST00000494654 SAMD1Q6SPF0 538 aaPredicted RBP4.91□□□□□ -1.62
MDC1-208ENST00000494654 DSG3P32926 999 aa4.89□□□□□ -1.63
MDC1-208ENST00000494654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.87□□□□□ -1.63
MDC1-208ENST00000494654 HNRNPUL2Q1KMD3 747 aaKnown RBP4.87□□□□□ -1.63
MDC1-208ENST00000494654 ZNF219Q9P2Y4 722 aaPredicted RBP4.85□□□□□ -1.63
MDC1-208ENST00000494654 ATXN8OSP0DMR3 200 aa4.84□□□□□ -1.63
MDC1-208ENST00000494654 POLA2Q14181 598 aa4.84□□□□□ -1.63
MDC1-208ENST00000494654 MKRN4PQ13434 485 aaPredicted RBP4.8□□□□□ -1.64
MDC1-208ENST00000494654 APLP2Q06481 763 aa4.78□□□□□ -1.64
MDC1-208ENST00000494654 PELP1Q8IZL8 1130 aaKnown RBP4.77□□□□□ -1.65
MDC1-208ENST00000494654 OSCARQ8IYS5 282 aa4.71□□□□□ -1.66
MDC1-208ENST00000494654 MYT1Q01538 1121 aa4.68□□□□□ -1.66
MDC1-208ENST00000494654 CCDC180Q9P1Z9 1646 aa4.64□□□□□ -1.67
MDC1-208ENST00000494654 FBLN2P98095 1184 aa4.64□□□□□ -1.67
MDC1-208ENST00000494654 ABCC9O60706 1549 aa4.63□□□□□ -1.67
MDC1-208ENST00000494654 HRCP23327 699 aa4.62□□□□□ -1.67
MDC1-208ENST00000494654 FKBP8Q14318 412 aa4.62□□□□□ -1.67
MDC1-208ENST00000494654 ZBTB12Q9Y330 459 aaPredicted RBP4.6□□□□□ -1.67
MDC1-208ENST00000494654 SPDYE4A6NLX3 237 aa4.59□□□□□ -1.67
MDC1-208ENST00000494654 MYO15BQ96JP2 1530 aa4.58□□□□□ -1.68
MDC1-208ENST00000494654 ZNF692Q9BU19 519 aaPredicted RBP4.57□□□□□ -1.68
MDC1-208ENST00000494654 SSUH2Q9Y2M2 353 aa4.57□□□□□ -1.68
MDC1-208ENST00000494654 SPDYE2BA6NHP3 402 aa4.55□□□□□ -1.68
MDC1-208ENST00000494654 SPDYE6P0CI01 402 aa4.55□□□□□ -1.68
MDC1-208ENST00000494654 SPDYE2Q495Y8 402 aa4.55□□□□□ -1.68
MDC1-208ENST00000494654 PABPN1Q86U42 306 aaKnown RBP eCLIP4.55□□□□□ -1.68
MDC1-208ENST00000494654 REM2Q8IYK8 340 aaPredicted RBP4.54□□□□□ -1.68
MDC1-208ENST00000494654 DCAF1Q9Y4B6 1507 aa4.52□□□□□ -1.69
MDC1-208ENST00000494654 RBM42Q9BTD8 480 aaKnown RBP4.52□□□□□ -1.69
MDC1-208ENST00000494654 PROM2Q8N271 834 aa4.51□□□□□ -1.69
MDC1-208ENST00000494654 AKT1S1Q96B36 256 aa4.51□□□□□ -1.69
MDC1-208ENST00000494654 PITPNM1O00562 1244 aa4.5□□□□□ -1.69
MDC1-208ENST00000494654 TTBK1Q5TCY1 1321 aaPredicted RBP4.49□□□□□ -1.69
MDC1-208ENST00000494654 CLEC11AQ9Y240 323 aa4.48□□□□□ -1.69
MDC1-208ENST00000494654 CHADLQ6NUI6 762 aa4.44□□□□□ -1.7
MDC1-208ENST00000494654 CHRDL2Q6WN34 429 aa4.44□□□□□ -1.7
MDC1-208ENST00000494654 SPDYE1Q8NFV5 336 aaPredicted RBP4.43□□□□□ -1.7
MDC1-208ENST00000494654 PIP4P2Q8N4L2 257 aa4.41□□□□□ -1.7
MDC1-208ENST00000494654 CREBZFQ9NS37 354 aa4.4□□□□□ -1.71
MDC1-208ENST00000494654 FXR2P51116 673 aaKnown RBP eCLIP4.39□□□□□ -1.71
MDC1-208ENST00000494654 PRR29P0C7W0 189 aa4.38□□□□□ -1.71
MDC1-208ENST00000494654 PRKAR2AP13861 404 aaKnown RBP4.37□□□□□ -1.71
MDC1-208ENST00000494654 PPARGC1BQ86YN6 1023 aaKnown RBP4.37□□□□□ -1.71
MDC1-208ENST00000494654 MNX1P50219 401 aaPredicted RBP4.36□□□□□ -1.71
MDC1-208ENST00000494654 VASPP50552 380 aaPredicted RBP4.36□□□□□ -1.71
MDC1-208ENST00000494654 IFNLR1Q8IU57 520 aaPredicted RBP4.36□□□□□ -1.71
MDC1-208ENST00000494654 EVX2Q03828 476 aa4.34□□□□□ -1.71
MDC1-208ENST00000494654 MIER1Q8N108 512 aa4.34□□□□□ -1.71
MDC1-208ENST00000494654 ZEB1P37275 1124 aaPredicted RBP4.33□□□□□ -1.72
MDC1-208ENST00000494654 POTEHQ6S545 545 aa4.33□□□□□ -1.72
MDC1-208ENST00000494654 STAG3Q9UJ98 1225 aa4.33□□□□□ -1.72
MDC1-208ENST00000494654 ZCCHC6Q5VYS8 1495 aaKnown RBP4.32□□□□□ -1.72
MDC1-208ENST00000494654 PLCD3Q8N3E9 789 aa4.32□□□□□ -1.72
MDC1-208ENST00000494654 PCGF6Q9BYE7 350 aa4.31□□□□□ -1.72
MDC1-208ENST00000494654 FBXO3Q9UK99 471 aa4.31□□□□□ -1.72
MDC1-208ENST00000494654 FARP1Q9Y4F1 1045 aaPredicted RBP4.31□□□□□ -1.72
MDC1-208ENST00000494654 RASEFQ8IZ41 740 aa4.29□□□□□ -1.72
MDC1-208ENST00000494654 ACIN1Q9UKV3 1341 aaKnown RBP4.28□□□□□ -1.72
MDC1-208ENST00000494654 DCAF8L2P0C7V8 631 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms