RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 FRMD6Q96NE9 622 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 ACBD3Q9H3P7 528 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 CLIC5Q9NZA1 410 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 TFIP11Q9UBB9 837 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 POLG2Q9UHN1 485 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 ASAP1Q9ULH1 1129 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 GJA3Q9Y6H8 435 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 CCDC163A0A0D9SF12 145 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 TK2O00142 265 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 PES1O00541 588 aaKnown RBP5.15□□□□□ -1.59
BRCA1-220ENST00000492859 NPHP1O15259 732 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 PLIN1O60240 522 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 XRCC5P13010 732 aaKnown RBP5.15□□□□□ -1.59
BRCA1-220ENST00000492859 CASQ1P31415 396 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 TRAPPC10P48553 1259 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 FAM160A1Q05DH4 1040 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 COL19A1Q14993 1142 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 PDIA6Q15084 440 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 TAS1R3Q7RTX0 852 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 PPARGC1BQ86YN6 1023 aaKnown RBP5.15□□□□□ -1.59
BRCA1-220ENST00000492859 RELTQ969Z4 430 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 KCTD12Q96CX2 325 aaKnown RBP5.15□□□□□ -1.59
BRCA1-220ENST00000492859 TTC14Q96N46 770 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 FAM210AQ96ND0 272 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 PAIP2Q9BPZ3 127 aaKnown RBP5.15□□□□□ -1.59
BRCA1-220ENST00000492859 C22orf23Q9BZE7 217 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 TGIF2Q9GZN2 237 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 ARNT2Q9HBZ2 717 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 ENAMQ9NRM1 1142 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 INTUQ9ULD6 942 aa5.15□□□□□ -1.59
BRCA1-220ENST00000492859 PABPN1LA6NDY0 278 aaKnown RBP5.14□□□□□ -1.59
BRCA1-220ENST00000492859 GRXCR2A6NFK2 248 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 TRIM64CA6NLI5 447 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 BHMG1C9JSJ3 638 aaPredicted RBP5.14□□□□□ -1.59
BRCA1-220ENST00000492859 IPO5O00410 1097 aaKnown RBP5.14□□□□□ -1.59
BRCA1-220ENST00000492859 KIF3BO15066 747 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 HSP90AB1P08238 724 aaKnown RBP5.14□□□□□ -1.59
BRCA1-220ENST00000492859 SRGNP10124 158 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 HMGN5P82970 282 aaKnown RBP5.14□□□□□ -1.59
BRCA1-220ENST00000492859 SLC20A2Q08357 652 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 E2F5Q15329 346 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 FAM161AQ3B820 660 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 INO80DQ53TQ3 878 aaPredicted RBP5.14□□□□□ -1.59
BRCA1-220ENST00000492859 C6orf132Q5T0Z8 1188 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 ARMC3Q5W041 872 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 TYW1BQ6NUM6 668 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 CATIPQ7Z7H3 387 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 FERMT3Q86UX7 667 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 SLF2Q8IX21 1173 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 NDUFAF2Q8N183 169 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 STK32AQ8WU08 396 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 UCN2Q96RP3 112 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 SLAIN2Q9P270 581 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 HDAC9Q9UKV0 1011 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 ZMIZ1Q9ULJ6 1067 aa5.14□□□□□ -1.59
BRCA1-220ENST00000492859 PRSS47A8MTI9 375 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 C3orf80F5H4A9 247 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 BRD3Q15059 726 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 SOGA3Q5TF21 947 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 UBE2Q1Q7Z7E8 422 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 TEX19Q8NA77 164 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 CCSER2Q9H7U1 834 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 PPCSQ9HAB8 311 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 CDHR5Q9HBB8 845 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 CD248Q9HCU0 757 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 TMEM63CQ9P1W3 806 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 TMCC3Q9ULS5 477 aa5.13□□□□□ -1.59
BRCA1-220ENST00000492859 PPFIA3O75145 1194 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 CAND2O75155 1236 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 U2AF1L5P0DN76 240 aaPredicted RBP5.12□□□□□ -1.59
BRCA1-220ENST00000492859 CDC27P30260 824 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 PTGER2P43116 358 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 NAP1L1P55209 391 aaKnown RBP5.12□□□□□ -1.59
BRCA1-220ENST00000492859 ZBED6P86452 979 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 U2AF1Q01081 240 aaKnown RBP eCLIP5.12□□□□□ -1.59
BRCA1-220ENST00000492859 TMEM259Q4ZIN3 620 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 IQCEQ6IPM2 695 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 CDHR1Q96JP9 859 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 SUDS3Q9H7L9 328 aaPredicted RBP5.12□□□□□ -1.59
BRCA1-220ENST00000492859 IP6K2Q9UHH9 426 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 PPP1R3GB7ZBB8 358 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 GNPATO15228 680 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 SLC26A4O43511 780 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 VAMP4O75379 141 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 RAPGEF3O95398 923 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 KRT18P05783 430 aaKnown RBP5.12□□□□□ -1.59
BRCA1-220ENST00000492859 NDUFV2P19404 249 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 CTHP32929 405 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 TSPAN7P41732 249 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 ZNF132P52740 706 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 SEPT2Q15019 361 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 TOMM20Q15388 145 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 PLEKHG4Q58EX7 1191 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 PPP4R4Q6NUP7 873 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 MYRIPQ8NFW9 859 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 HELQQ8TDG4 1101 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 RNPC3Q96LT9 517 aaKnown RBP5.12□□□□□ -1.59
BRCA1-220ENST00000492859 TMUB1Q9BVT8 246 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 PTPRHQ9HD43 1115 aa5.12□□□□□ -1.59
BRCA1-220ENST00000492859 ZNF69Q9UC07 566 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms