RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 SSFA2P28290 1259 aa10.04□□□□□ -0.8
CLDN1-202ENST00000490800 C1orf141Q5JVX7 400 aa10.04□□□□□ -0.8
CLDN1-202ENST00000490800 RBM26Q5T8P6 1007 aaKnown RBP10.04□□□□□ -0.8
CLDN1-202ENST00000490800 NFATC2IPQ8NCF5 419 aa10.04□□□□□ -0.8
CLDN1-202ENST00000490800 ITGB4P16144 1822 aa10.04□□□□□ -0.8
CLDN1-202ENST00000490800 PLEKHG2Q9H7P9 1386 aa10.03□□□□□ -0.8
CLDN1-202ENST00000490800 TUBGCP6Q96RT7 1819 aa10.03□□□□□ -0.8
CLDN1-202ENST00000490800 CD2APQ9Y5K6 639 aa10.03□□□□□ -0.8
CLDN1-202ENST00000490800 C5P01031 1676 aa10.02□□□□□ -0.8
CLDN1-202ENST00000490800 PTCD1O75127 700 aaKnown RBP10.02□□□□□ -0.81
CLDN1-202ENST00000490800 HMOX1P09601 288 aa10.02□□□□□ -0.81
CLDN1-202ENST00000490800 YBX3P16989 372 aaKnown RBP eCLIP10.02□□□□□ -0.81
CLDN1-202ENST00000490800 TRAPPC3LQ5T215 181 aa10.02□□□□□ -0.81
CLDN1-202ENST00000490800 LGR6Q9HBX8 967 aa10.02□□□□□ -0.81
CLDN1-202ENST00000490800 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.02□□□□□ -0.81
CLDN1-202ENST00000490800 C4BP0C0L5 1744 aa10.02□□□□□ -0.81
CLDN1-202ENST00000490800 COL24A1Q17RW2 1714 aa10.02□□□□□ -0.81
CLDN1-202ENST00000490800 KDM6AO15550 1401 aaPredicted RBP10.01□□□□□ -0.81
CLDN1-202ENST00000490800 GRIN3BO60391 1043 aa10.01□□□□□ -0.81
CLDN1-202ENST00000490800 DIAPH1O60610 1272 aaKnown RBP10.01□□□□□ -0.81
CLDN1-202ENST00000490800 CENPBP07199 599 aaPredicted RBP10.01□□□□□ -0.81
CLDN1-202ENST00000490800 AKAP4Q5JQC9 854 aa10.01□□□□□ -0.81
CLDN1-202ENST00000490800 RC3H1Q5TC82 1133 aaKnown RBP10.01□□□□□ -0.81
CLDN1-202ENST00000490800 OXER1Q8TDS5 423 aa10.01□□□□□ -0.81
CLDN1-202ENST00000490800 RTCBQ9Y3I0 505 aaKnown RBP10.01□□□□□ -0.81
CLDN1-202ENST00000490800 GOLGB1Q14789 3259 aaKnown RBP10.01□□□□□ -0.81
CLDN1-202ENST00000490800 KDRP35968 1356 aa10.01□□□□□ -0.81
CLDN1-202ENST00000490800 GRXCR2A6NFK2 248 aa10□□□□□ -0.81
CLDN1-202ENST00000490800 RPS6KA4O75676 772 aa10□□□□□ -0.81
CLDN1-202ENST00000490800 HNRNPUQ00839 825 aaKnown RBP eCLIP10□□□□□ -0.81
CLDN1-202ENST00000490800 GPIHBP1Q8IV16 184 aa10□□□□□ -0.81
CLDN1-202ENST00000490800 WWC3Q9ULE0 1092 aa10□□□□□ -0.81
CLDN1-202ENST00000490800 TAF1LQ8IZX4 1826 aa10□□□□□ -0.81
CLDN1-202ENST00000490800 MTHFSDQ2M296 383 aaKnown RBP9.99□□□□□ -0.81
CLDN1-202ENST00000490800 NLGN1Q8N2Q7 840 aa9.99□□□□□ -0.81
CLDN1-202ENST00000490800 U2SURPO15042 1029 aaKnown RBP9.98□□□□□ -0.81
CLDN1-202ENST00000490800 RNMTO43148 476 aaKnown RBP9.98□□□□□ -0.81
CLDN1-202ENST00000490800 MMP10P09238 476 aa9.98□□□□□ -0.81
CLDN1-202ENST00000490800 RFC4P35249 363 aa9.98□□□□□ -0.81
CLDN1-202ENST00000490800 CFAP53Q96M91 514 aa9.98□□□□□ -0.81
CLDN1-202ENST00000490800 SLC52A2Q9HAB3 445 aa9.98□□□□□ -0.81
CLDN1-202ENST00000490800 ADAMTS8Q9UP79 889 aa9.98□□□□□ -0.81
CLDN1-202ENST00000490800 CNTNAP4Q9C0A0 1308 aa9.98□□□□□ -0.81
CLDN1-202ENST00000490800 COL3A1P02461 1466 aaPredicted RBP9.98□□□□□ -0.81
CLDN1-202ENST00000490800 GYS1P13807 737 aa9.97□□□□□ -0.81
CLDN1-202ENST00000490800 CRKLP46109 303 aaKnown RBP9.97□□□□□ -0.81
CLDN1-202ENST00000490800 SLC39A6Q13433 755 aa9.97□□□□□ -0.81
CLDN1-202ENST00000490800 WDR43Q15061 677 aaKnown RBP eCLIP9.97□□□□□ -0.81
CLDN1-202ENST00000490800 UBR3Q6ZT12 1888 aa9.97□□□□□ -0.81
CLDN1-202ENST00000490800 TBC1D12O60347 775 aa9.96□□□□□ -0.82
CLDN1-202ENST00000490800 INTS5Q6P9B9 1019 aaKnown RBP9.96□□□□□ -0.82
CLDN1-202ENST00000490800 DNAJC10Q8IXB1 793 aa9.96□□□□□ -0.82
CLDN1-202ENST00000490800 DDX12PQ92771 950 aa9.96□□□□□ -0.82
CLDN1-202ENST00000490800 EVI5O60447 810 aa9.95□□□□□ -0.82
CLDN1-202ENST00000490800 SRP68Q9UHB9 627 aaKnown RBP9.95□□□□□ -0.82
CLDN1-202ENST00000490800 ZBED9Q6R2W3 1325 aa9.95□□□□□ -0.82
CLDN1-202ENST00000490800 A0A0G2JLW4 131 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 C1QTNF8P60827 252 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 TGFB2P61812 414 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 IL17REQ8NFR9 667 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 SLC24A3Q9HC58 644 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 PARP3Q9Y6F1 533 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 CHD4Q14839 1912 aa9.94□□□□□ -0.82
CLDN1-202ENST00000490800 ZMYND10O75800 440 aa9.93□□□□□ -0.82
CLDN1-202ENST00000490800 CYP19A1P11511 503 aaPredicted RBP9.93□□□□□ -0.82
CLDN1-202ENST00000490800 PTCD2Q8WV60 388 aaKnown RBP9.93□□□□□ -0.82
CLDN1-202ENST00000490800 PHACTR3Q96KR7 559 aa9.93□□□□□ -0.82
CLDN1-202ENST00000490800 CCDC87Q9NVE4 849 aa9.93□□□□□ -0.82
CLDN1-202ENST00000490800 USP42Q9H9J4 1324 aaKnown RBP9.92□□□□□ -0.82
CLDN1-202ENST00000490800 SENP3-EIF4A1A0A087X0R7 540 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 GNAT3A8MTJ3 354 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 ZPR1O75312 459 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 GIGYF1O75420 1035 aaPredicted RBP9.92□□□□□ -0.82
CLDN1-202ENST00000490800 DPEP1P16444 411 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 TM4SF1P30408 202 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 USPL1Q5W0Q7 1092 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 GAS2L2Q8NHY3 880 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 NUDCQ9Y266 331 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 BCS1LQ9Y276 419 aa9.92□□□□□ -0.82
CLDN1-202ENST00000490800 ZNF831Q5JPB2 1677 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 CANXP27824 592 aaKnown RBP9.91□□□□□ -0.82
CLDN1-202ENST00000490800 PRKAR2BP31323 418 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 DDR1Q08345 913 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 TEFQ10587 303 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 CCDC146Q8IYE0 955 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 TTC5Q8N0Z6 440 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 ZBTB1Q9Y2K1 713 aa9.91□□□□□ -0.82
CLDN1-202ENST00000490800 MYH14Q7Z406 1995 aaKnown RBP9.9□□□□□ -0.82
CLDN1-202ENST00000490800 SOS1Q07889 1333 aaPredicted RBP9.9□□□□□ -0.82
CLDN1-202ENST00000490800 SLC34A2O95436 690 aa9.9□□□□□ -0.82
CLDN1-202ENST00000490800 POTEJP0CG39 1038 aa9.9□□□□□ -0.82
CLDN1-202ENST00000490800 U2AF1L5P0DN76 240 aaPredicted RBP9.9□□□□□ -0.82
CLDN1-202ENST00000490800 KCNA3P22001 575 aa9.9□□□□□ -0.82
CLDN1-202ENST00000490800 U2AF1Q01081 240 aaKnown RBP eCLIP9.9□□□□□ -0.82
CLDN1-202ENST00000490800 ZNF790Q6PG37 636 aa9.9□□□□□ -0.82
CLDN1-202ENST00000490800 ZNF526Q8TF50 670 aaPredicted RBP9.9□□□□□ -0.82
CLDN1-202ENST00000490800 ZNF496Q96IT1 587 aaPredicted RBP9.9□□□□□ -0.82
CLDN1-202ENST00000490800 RSPH6AQ9H0K4 717 aa9.9□□□□□ -0.82
CLDN1-202ENST00000490800 NARFQ9UHQ1 456 aa9.9□□□□□ -0.82
CLDN1-202ENST00000490800 SCN11AQ9UI33 1791 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms