RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 TRIM28Q13263 835 aaKnown RBP8.57□□□□□ -1.04
PTPRE-209ENST00000487428 KRT24Q2M2I5 525 aa8.57□□□□□ -1.04
PTPRE-209ENST00000487428 GIGYF2Q6Y7W6 1299 aaKnown RBP8.57□□□□□ -1.04
PTPRE-209ENST00000487428 DZIP3Q86Y13 1208 aaKnown RBP8.57□□□□□ -1.04
PTPRE-209ENST00000487428 TSPYL6Q8N831 410 aa8.57□□□□□ -1.04
PTPRE-209ENST00000487428 PLBD2Q8NHP8 589 aa8.57□□□□□ -1.04
PTPRE-209ENST00000487428 TSR2Q969E8 191 aaKnown RBP8.57□□□□□ -1.04
PTPRE-209ENST00000487428 C10orf71Q711Q0 1435 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 HSP90AB3PQ58FF7 597 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 STK31Q9BXU1 1019 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 CHPF2Q9P2E5 772 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 PDZRN3Q9UPQ7 1066 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 CD2APQ9Y5K6 639 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 CARMIL3Q8ND23 1372 aa8.56□□□□□ -1.04
PTPRE-209ENST00000487428 POLRMTO00411 1230 aaKnown RBP8.55□□□□□ -1.04
PTPRE-209ENST00000487428 PHF14O94880 888 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 EIF2S2P20042 333 aaKnown RBP8.55□□□□□ -1.04
PTPRE-209ENST00000487428 FKBP8Q14318 412 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 PARP10Q53GL7 1025 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 USPL1Q5W0Q7 1092 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 KIF6Q6ZMV9 814 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 ZNF34Q8IZ26 560 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 PXDNLA1KZ92 1463 aa8.55□□□□□ -1.04
PTPRE-209ENST00000487428 PTPRCP08575 1304 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 ZBTB7AO95365 584 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 DDX58O95786 925 aaKnown RBP8.54□□□□□ -1.04
PTPRE-209ENST00000487428 NFIXQ14938 502 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 PROSER3Q2NL68 480 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 ANKRD13DQ6ZTN6 518 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 COPS6Q7L5N1 327 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 CDCA7LQ96GN5 454 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 ARXQ96QS3 562 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 TBC1D2BQ9UPU7 963 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 SALL2Q9Y467 1007 aaPredicted RBP8.54□□□□□ -1.04
PTPRE-209ENST00000487428 CHD4Q14839 1912 aa8.54□□□□□ -1.04
PTPRE-209ENST00000487428 DDX60Q8IY21 1712 aaKnown RBP8.54□□□□□ -1.04
PTPRE-209ENST00000487428 KLRG2A4D1S0 409 aaPredicted RBP8.53□□□□□ -1.04
PTPRE-209ENST00000487428 MMP10P09238 476 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 TGFB2P61812 414 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 DDR1Q08345 913 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 TCIRG1Q13488 830 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 KSR2Q6VAB6 950 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 TTLL7Q6ZT98 887 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 XAGE3Q8WTP9 111 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 ARHGAP45Q92619 1136 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 SETDB2Q96T68 719 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 ISCA1Q9BUE6 129 aa8.53□□□□□ -1.04
PTPRE-209ENST00000487428 SRP68Q9UHB9 627 aaKnown RBP8.53□□□□□ -1.04
PTPRE-209ENST00000487428 ELL2O00472 640 aaPredicted RBP8.52□□□□□ -1.05
PTPRE-209ENST00000487428 MSH5O43196 834 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 SLC4A2P04920 1241 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 MYL6BP14649 208 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 FLIIQ13045 1269 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 SLC10A5Q5PT55 438 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 TBC1D9BQ66K14 1250 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 CCDC191Q8NCU4 936 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 METTL22Q9BUU2 404 aaPredicted RBP8.52□□□□□ -1.05
PTPRE-209ENST00000487428 NYXQ9GZU5 481 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 ATF5Q9Y2D1 282 aaPredicted RBP8.52□□□□□ -1.05
PTPRE-209ENST00000487428 PARP3Q9Y6F1 533 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 KIF16BQ96L93 1317 aa8.52□□□□□ -1.05
PTPRE-209ENST00000487428 COL11A2P13942 1736 aaPredicted RBP8.51□□□□□ -1.05
PTPRE-209ENST00000487428 ADCY9O60503 1353 aa8.51□□□□□ -1.05
PTPRE-209ENST00000487428 SERPINB2P05120 415 aa8.51□□□□□ -1.05
PTPRE-209ENST00000487428 PIP4K2AP48426 406 aaPredicted RBP8.51□□□□□ -1.05
PTPRE-209ENST00000487428 RARSP54136 660 aaKnown RBP8.51□□□□□ -1.05
PTPRE-209ENST00000487428 HLFQ16534 295 aa8.51□□□□□ -1.05
PTPRE-209ENST00000487428 TPTE2Q6XPS3 522 aa8.51□□□□□ -1.05
PTPRE-209ENST00000487428 SMIM5Q71RC9 77 aa8.51□□□□□ -1.05
PTPRE-209ENST00000487428 MRPL50Q8N5N7 158 aaKnown RBP8.51□□□□□ -1.05
PTPRE-209ENST00000487428 BRIP1Q9BX63 1249 aa8.51□□□□□ -1.05
PTPRE-209ENST00000487428 PHAXQ9H814 394 aaKnown RBP8.51□□□□□ -1.05
PTPRE-209ENST00000487428 ANXA1P04083 346 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 HSP90B1P14625 803 aaKnown RBP8.5□□□□□ -1.05
PTPRE-209ENST00000487428 FER1L6Q2WGJ9 1857 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 PPP1R42Q7Z4L9 355 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 NLRP10Q86W26 655 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 LINS1Q8NG48 757 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 SSH1Q8WYL5 1049 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 SYT17Q9BSW7 474 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 NIP7Q9Y221 180 aaKnown RBP eCLIP8.5□□□□□ -1.05
PTPRE-209ENST00000487428 UBN2Q6ZU65 1347 aa8.5□□□□□ -1.05
PTPRE-209ENST00000487428 SBF1O95248 1867 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 DICER1Q9UPY3 1922 aaKnown RBP8.49□□□□□ -1.05
PTPRE-209ENST00000487428 PI4KAP2A4QPH2 592 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 NTSR2O95665 410 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 NEXNQ0ZGT2 675 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 CRY2Q49AN0 593 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 MSL1Q68DK7 614 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 PRR5LQ6MZQ0 368 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 RIC3Q7Z5B4 369 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 PI4KAP1Q8N8J0 262 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 CNBD1Q8NA66 436 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 DNAAF4Q8WXU2 420 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 NECTIN2Q92692 538 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 ZBTB3Q9H5J0 574 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 TNRC6CQ9HCJ0 1690 aaKnown RBP8.49□□□□□ -1.05
PTPRE-209ENST00000487428 CDHR2Q9BYE9 1310 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 CACNA1SQ13698 1873 aa8.49□□□□□ -1.05
PTPRE-209ENST00000487428 LRRC37AA6NMS7 1700 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms