RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ARHGEF10LQ9HCE6 1279 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 TIMMDC1Q9NPL8 285 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 TMEM229AB2RXF0 380 aa6.57□□□□□ -1.36
PTCD3-216ENST00000487043 MTMR3Q13615 1198 aa6.57□□□□□ -1.36
PTCD3-216ENST00000487043 NAA30Q147X3 362 aaPredicted RBP6.57□□□□□ -1.36
PTCD3-216ENST00000487043 PLA2G4EQ3MJ16 856 aa6.57□□□□□ -1.36
PTCD3-216ENST00000487043 GRIP2Q9C0E4 1043 aa6.57□□□□□ -1.36
PTCD3-216ENST00000487043 NUCKS1Q9H1E3 243 aaKnown RBP6.57□□□□□ -1.36
PTCD3-216ENST00000487043 OSBPL3Q9H4L5 887 aa6.57□□□□□ -1.36
PTCD3-216ENST00000487043 ANKRD33BA6NCL7 494 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 PTCD1O75127 700 aaKnown RBP6.56□□□□□ -1.36
PTCD3-216ENST00000487043 F11P03951 625 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 GDF10P55107 478 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 TNS4Q8IZW8 715 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 GALNT6Q8NCL4 622 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 BCL2L13Q9BXK5 485 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 RAB6BQ9NRW1 208 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 SERTAD1Q9UHV2 236 aa6.56□□□□□ -1.36
PTCD3-216ENST00000487043 SPATA31C2B4DYI2 1134 aa6.55□□□□□ -1.36
PTCD3-216ENST00000487043 WASLO00401 505 aaPredicted RBP6.55□□□□□ -1.36
PTCD3-216ENST00000487043 C21orf2O43822 256 aa6.55□□□□□ -1.36
PTCD3-216ENST00000487043 MAPK1P28482 360 aa6.55□□□□□ -1.36
PTCD3-216ENST00000487043 FKBP4Q02790 459 aaKnown RBP eCLIP6.55□□□□□ -1.36
PTCD3-216ENST00000487043 WDR44Q5JSH3 913 aa6.55□□□□□ -1.36
PTCD3-216ENST00000487043 SCG3Q8WXD2 468 aaKnown RBP6.55□□□□□ -1.36
PTCD3-216ENST00000487043 GPAMQ9HCL2 828 aa6.55□□□□□ -1.36
PTCD3-216ENST00000487043 BACH1O14867 736 aa6.54□□□□□ -1.36
PTCD3-216ENST00000487043 IGFBP4P22692 258 aa6.54□□□□□ -1.36
PTCD3-216ENST00000487043 GTF2E1P29083 439 aaPredicted RBP6.54□□□□□ -1.36
PTCD3-216ENST00000487043 PHKA2P46019 1235 aa6.54□□□□□ -1.36
PTCD3-216ENST00000487043 SCNN1DP51172 638 aa6.54□□□□□ -1.36
PTCD3-216ENST00000487043 GIPC2Q8TF65 315 aa6.54□□□□□ -1.36
PTCD3-216ENST00000487043 CHMP7Q8WUX9 453 aaPredicted RBP6.54□□□□□ -1.36
PTCD3-216ENST00000487043 SPOCK3Q9BQ16 436 aa6.54□□□□□ -1.36
PTCD3-216ENST00000487043 OIP5O43482 229 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 FOXO3O43524 673 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 INHAP05111 366 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 ZNF16P17020 682 aaPredicted RBP6.53□□□□□ -1.36
PTCD3-216ENST00000487043 MAP2K3P46734 347 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 SF3B2Q13435 895 aaKnown RBP6.53□□□□□ -1.36
PTCD3-216ENST00000487043 CNKSR1Q969H4 720 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 VTI1AQ96AJ9 217 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 MRRFQ96E11 262 aaKnown RBP6.53□□□□□ -1.36
PTCD3-216ENST00000487043 OXCT2Q9BYC2 517 aaPredicted RBP6.53□□□□□ -1.36
PTCD3-216ENST00000487043 TSPAN10Q9H1Z9 355 aaPredicted RBP6.53□□□□□ -1.36
PTCD3-216ENST00000487043 ETNK1Q9HBU6 452 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 LRRC4BQ9NT99 713 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 ATAD2Q6PL18 1390 aa6.53□□□□□ -1.36
PTCD3-216ENST00000487043 GNRH1P01148 92 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 CENPCQ03188 943 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 ECM1Q16610 540 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 NPAS4Q8IUM7 802 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 ESYT1Q9BSJ8 1104 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 RRAGCQ9HB90 399 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 DCTN4Q9UJW0 460 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 PHF24Q9UPV7 400 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 HRH3Q9Y5N1 445 aa6.52□□□□□ -1.37
PTCD3-216ENST00000487043 ADAM23O75077 832 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 ARHGAP4P98171 946 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 GNASQ5JWF2 1037 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 TBCELQ5QJ74 424 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 TMEM214Q6NUQ4 689 aaKnown RBP6.51□□□□□ -1.37
PTCD3-216ENST00000487043 PGBD3Q8N328 593 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 HELQQ8TDG4 1101 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 COL26A1Q96A83 441 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 ZSCAN10Q96SZ4 725 aaPredicted RBP6.51□□□□□ -1.37
PTCD3-216ENST00000487043 CFHR5Q9BXR6 569 aa6.51□□□□□ -1.37
PTCD3-216ENST00000487043 PPP1R12BO60237 982 aaPredicted RBP6.5□□□□□ -1.37
PTCD3-216ENST00000487043 IL2RAP01589 272 aa6.5□□□□□ -1.37
PTCD3-216ENST00000487043 EPHA4P54764 986 aa6.5□□□□□ -1.37
PTCD3-216ENST00000487043 ZNF326Q5BKZ1 582 aaKnown RBP6.5□□□□□ -1.37
PTCD3-216ENST00000487043 ZSCAN29Q8IWY8 852 aaPredicted RBP6.5□□□□□ -1.37
PTCD3-216ENST00000487043 KIAA1522Q9P206 1035 aaPredicted RBP6.5□□□□□ -1.37
PTCD3-216ENST00000487043 MKL2Q9ULH7 1088 aa6.5□□□□□ -1.37
PTCD3-216ENST00000487043 A0A1B0GTH6 734 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 FAM13AO94988 1023 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 ITGB2P05107 769 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 SNRPNP63162 240 aaKnown RBP6.49□□□□□ -1.37
PTCD3-216ENST00000487043 ESCO1Q5FWF5 840 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 KLRG1Q96E93 195 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 ASB16Q96NS5 453 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 SLC4A9Q96Q91 983 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 SAP130Q9H0E3 1048 aa6.49□□□□□ -1.37
PTCD3-216ENST00000487043 A6NJY4 79 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 SHISA8B8ZZ34 492 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 PROCP04070 461 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 AMPD1P23109 780 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 MPSTP25325 297 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 SMTNP53814 917 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 TAGLNQ01995 201 aaKnown RBP6.48□□□□□ -1.37
PTCD3-216ENST00000487043 C16orf46Q6P387 395 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 SLC9A9Q8IVB4 645 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 RUBCNLQ9H714 662 aa6.48□□□□□ -1.37
PTCD3-216ENST00000487043 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.48□□□□□ -1.371e-9■□□□□ 8.4
PTCD3-216ENST00000487043 GDF2Q9UK05 429 aaPredicted RBP6.48□□□□□ -1.37
PTCD3-216ENST00000487043 THBS1P07996 1170 aa6.47□□□□□ -1.37
PTCD3-216ENST00000487043 BMP4P12644 408 aa6.47□□□□□ -1.37
PTCD3-216ENST00000487043 AAMPQ13685 434 aa6.47□□□□□ -1.37
PTCD3-216ENST00000487043 EFHC2Q5JST6 749 aa6.47□□□□□ -1.37
PTCD3-216ENST00000487043 GOLGA6L1Q8N7Z2 621 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms