RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 HEG1Q9ULI3 1381 aa7.68□□□□□ -1.18
CUX1-208ENST00000485792 ANKRD36CQ5JPF3 1778 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 SENP3-EIF4A1A0A087X0R7 540 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 LOC102724428A0A0B4J2F2 783 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 SNPHO15079 494 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 ZBTB7AO95365 584 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 HMGB2P26583 209 aaKnown RBP7.67□□□□□ -1.18
CUX1-208ENST00000485792 SIK1P57059 783 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 MCM10Q7L590 875 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 SMARCC1Q92922 1105 aaPredicted RBP7.67□□□□□ -1.18
CUX1-208ENST00000485792 CFAP53Q96M91 514 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 SLC52A2Q9HAB3 445 aa7.67□□□□□ -1.18
CUX1-208ENST00000485792 ZNF316A6NFI3 1004 aaPredicted RBP7.66□□□□□ -1.18
CUX1-208ENST00000485792 HTATSF1O43719 755 aaKnown RBP7.66□□□□□ -1.18
CUX1-208ENST00000485792 PDE4AP27815 886 aa7.66□□□□□ -1.18
CUX1-208ENST00000485792 MFSD10Q14728 455 aa7.66□□□□□ -1.18
CUX1-208ENST00000485792 NFATC2IPQ8NCF5 419 aa7.66□□□□□ -1.18
CUX1-208ENST00000485792 FAM163AQ96GL9 167 aaPredicted RBP7.66□□□□□ -1.18
CUX1-208ENST00000485792 CARMIL3Q8ND23 1372 aa7.66□□□□□ -1.18
CUX1-208ENST00000485792 LAMB2P55268 1798 aa7.66□□□□□ -1.18
CUX1-208ENST00000485792 CACNA1SQ13698 1873 aa7.66□□□□□ -1.18
CUX1-208ENST00000485792 U2AF1L5P0DN76 240 aaPredicted RBP7.65□□□□□ -1.18
CUX1-208ENST00000485792 U2AF1Q01081 240 aaKnown RBP eCLIP7.65□□□□□ -1.18
CUX1-208ENST00000485792 RC3H1Q5TC82 1133 aaKnown RBP7.65□□□□□ -1.18
CUX1-208ENST00000485792 INTS5Q6P9B9 1019 aaKnown RBP7.65□□□□□ -1.18
CUX1-208ENST00000485792 DNAJC10Q8IXB1 793 aa7.65□□□□□ -1.18
CUX1-208ENST00000485792 CCDC146Q8IYE0 955 aa7.65□□□□□ -1.18
CUX1-208ENST00000485792 SLC16A10Q8TF71 515 aa7.65□□□□□ -1.18
CUX1-208ENST00000485792 LARP6Q9BRS8 491 aaKnown RBP7.65□□□□□ -1.18
CUX1-208ENST00000485792 TMOD3Q9NYL9 352 aa7.65□□□□□ -1.18
CUX1-208ENST00000485792 NUDCQ9Y266 331 aa7.65□□□□□ -1.18
CUX1-208ENST00000485792 ARFGEF2Q9Y6D5 1785 aa7.65□□□□□ -1.18
CUX1-208ENST00000485792 ARFGEF1Q9Y6D6 1849 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 PXDNLA1KZ92 1463 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 C10orf71Q711Q0 1435 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 CNTNAP4Q9C0A0 1308 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 GNAT3A8MTJ3 354 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 KRT24Q2M2I5 525 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 C1orf141Q5JVX7 400 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 MSL1Q68DK7 614 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 GAS2L2Q8NHY3 880 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 ZNF496Q96IT1 587 aaPredicted RBP7.64□□□□□ -1.19
CUX1-208ENST00000485792 BCL2L12Q9HB09 334 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 GPHNQ9NQX3 736 aaPredicted RBP7.64□□□□□ -1.19
CUX1-208ENST00000485792 WDR70Q9NW82 654 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 STK32BQ9NY57 414 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 ZBTB1Q9Y2K1 713 aa7.64□□□□□ -1.19
CUX1-208ENST00000485792 SOS1Q07889 1333 aaPredicted RBP7.63□□□□□ -1.19
CUX1-208ENST00000485792 PTCD1O75127 700 aaKnown RBP7.63□□□□□ -1.19
CUX1-208ENST00000485792 PIP4K2AP48426 406 aaPredicted RBP7.63□□□□□ -1.19
CUX1-208ENST00000485792 TMEM92Q6UXU6 159 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 LRP10Q7Z4F1 713 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 SLC51AQ86UW1 340 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 NLGN2Q8NFZ4 835 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 TMC2Q8TDI7 906 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 MTFR1LQ9H019 292 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 SRP68Q9UHB9 627 aaKnown RBP7.63□□□□□ -1.19
CUX1-208ENST00000485792 ADAMTS8Q9UP79 889 aa7.63□□□□□ -1.19
CUX1-208ENST00000485792 RRP7AQ9Y3A4 280 aaKnown RBP7.63□□□□□ -1.19
CUX1-208ENST00000485792 DDX60Q8IY21 1712 aaKnown RBP7.63□□□□□ -1.19
CUX1-208ENST00000485792 SBF1O95248 1867 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 CCDC88AQ3V6T2 1871 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.62□□□□□ -1.19
CUX1-208ENST00000485792 KIF3CO14782 793 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 PHF14O94880 888 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 CYP19A1P11511 503 aaPredicted RBP7.62□□□□□ -1.19
CUX1-208ENST00000485792 CRKLP46109 303 aaKnown RBP7.62□□□□□ -1.19
CUX1-208ENST00000485792 CABP4P57796 275 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 DDR1Q08345 913 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 DDX27Q96GQ7 796 aaKnown RBP7.62□□□□□ -1.19
CUX1-208ENST00000485792 SPON1Q9HCB6 807 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 MIS18AQ9NYP9 233 aa7.62□□□□□ -1.19
CUX1-208ENST00000485792 COL15A1P39059 1388 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 C2orf72A6NCS6 295 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 NBPF26B4DH59 902 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 SSFA2P28290 1259 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 ATP6V1AP38606 617 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 NFE2L2Q16236 605 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 NBPF10Q6P3W6 841 aaKnown RBP7.61□□□□□ -1.19
CUX1-208ENST00000485792 NBPF15Q8N660 670 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 FLAD1Q8NFF5 587 aa7.61□□□□□ -1.19
CUX1-208ENST00000485792 USP42Q9H9J4 1324 aaKnown RBP7.6□□□□□ -1.19
CUX1-208ENST00000485792 GNPATO15228 680 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 RPS6KA4O75676 772 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 GYS1P13807 737 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 TMPOP42166 694 aaKnown RBP7.6□□□□□ -1.19
CUX1-208ENST00000485792 DSG2Q14126 1118 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 PPP1R15BQ5SWA1 713 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 ZNF790Q6PG37 636 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 PNISRQ8TF01 805 aaKnown RBP7.6□□□□□ -1.19
CUX1-208ENST00000485792 FHDC1Q9C0D6 1143 aaPredicted RBP7.6□□□□□ -1.19
CUX1-208ENST00000485792 TAF1P21675 1872 aa7.6□□□□□ -1.19
CUX1-208ENST00000485792 DICER1Q9UPY3 1922 aaKnown RBP7.59□□□□□ -1.19
CUX1-208ENST00000485792 FOXK1P85037 733 aa7.59□□□□□ -1.19
CUX1-208ENST00000485792 PROSER3Q2NL68 480 aa7.59□□□□□ -1.19
CUX1-208ENST00000485792 ARHGEF1Q92888 912 aaKnown RBP7.59□□□□□ -1.19
CUX1-208ENST00000485792 PNNQ9H307 717 aaKnown RBP7.59□□□□□ -1.19
CUX1-208ENST00000485792 TFCP2L1Q9NZI6 479 aa7.59□□□□□ -1.19
CUX1-208ENST00000485792 USP16Q9Y5T5 823 aa7.59□□□□□ -1.19
CUX1-208ENST00000485792 SNED1Q8TER0 1413 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms