RNA–Protein interactions for RNA: ENST00000483631.1

HPS4-213, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 737 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-213ENST00000483631 ERBB4Q15303 1308 aa26.13■■□□□ 1.77
HPS4-213ENST00000483631 TMPOP42166 694 aaKnown RBP26.12■■□□□ 1.77
HPS4-213ENST00000483631 ERVV-1B6SEH8 477 aa26.11■■□□□ 1.77
HPS4-213ENST00000483631 LMNB1P20700 586 aa26.11■■□□□ 1.77
HPS4-213ENST00000483631 STYK1Q6J9G0 422 aa26.11■■□□□ 1.77
HPS4-213ENST00000483631 NBPF5PQ86XG9 351 aaPredicted RBP26.11■■□□□ 1.77
HPS4-213ENST00000483631 CNKSR1Q969H4 720 aa26.11■■□□□ 1.77
HPS4-213ENST00000483631 KDM2BQ8NHM5 1336 aa26.11■■□□□ 1.77
HPS4-213ENST00000483631 CCDC88AQ3V6T2 1871 aa26.11■■□□□ 1.77
HPS4-213ENST00000483631 TPTE2Q6XPS3 522 aa26.1■■□□□ 1.77
HPS4-213ENST00000483631 ZNF622Q969S3 477 aaKnown RBP eCLIP26.1■■□□□ 1.774e-6■■□□□ 13.5
HPS4-213ENST00000483631 NIP7Q9Y221 180 aaKnown RBP eCLIP26.1■■□□□ 1.77
HPS4-213ENST00000483631 FER1L6Q2WGJ9 1857 aa26.1■■□□□ 1.77
HPS4-213ENST00000483631 NUP98P52948 1817 aa26.09■■□□□ 1.77
HPS4-213ENST00000483631 TOMM70O94826 608 aa26.09■■□□□ 1.77
HPS4-213ENST00000483631 SRGNP10124 158 aa26.09■■□□□ 1.77
HPS4-213ENST00000483631 MASTLQ96GX5 879 aa26.09■■□□□ 1.77
HPS4-213ENST00000483631 TSPYL4Q9UJ04 414 aa26.09■■□□□ 1.77
HPS4-213ENST00000483631 TNRC6CQ9HCJ0 1690 aaKnown RBP26.09■■□□□ 1.77
HPS4-213ENST00000483631 KLRG2A4D1S0 409 aaPredicted RBP26.08■■□□□ 1.77
HPS4-213ENST00000483631 HSPA6P17066 643 aa26.08■■□□□ 1.77
HPS4-213ENST00000483631 RASSF7Q02833 373 aa26.07■■□□□ 1.76
HPS4-213ENST00000483631 CCDC24Q8N4L8 307 aa26.07■■□□□ 1.76
HPS4-213ENST00000483631 DICER1Q9UPY3 1922 aaKnown RBP26.07■■□□□ 1.76
HPS4-213ENST00000483631 NFKBIEO00221 500 aa26.06■■□□□ 1.76
HPS4-213ENST00000483631 WDR43Q15061 677 aaKnown RBP eCLIP26.06■■□□□ 1.76
HPS4-213ENST00000483631 SOGA3Q5TF21 947 aa26.06■■□□□ 1.76
HPS4-213ENST00000483631 RUNDC1Q96C34 613 aa26.06■■□□□ 1.76
HPS4-213ENST00000483631 PRKRIP1Q9H875 184 aaPredicted RBP26.06■■□□□ 1.76
HPS4-213ENST00000483631 NMRK2Q9NPI5 230 aa26.06■■□□□ 1.76
HPS4-213ENST00000483631 MAP3K15Q6ZN16 1313 aa26.06■■□□□ 1.76
HPS4-213ENST00000483631 SLX4Q8IY92 1834 aa26.05■■□□□ 1.76
HPS4-213ENST00000483631 HLFQ16534 295 aa26.05■■□□□ 1.76
HPS4-213ENST00000483631 LTBP3Q9NS15 1303 aa26.05■■□□□ 1.76
HPS4-213ENST00000483631 CACNA1SQ13698 1873 aa26.04■■□□□ 1.76
HPS4-213ENST00000483631 KIF6Q6ZMV9 814 aa26.04■■□□□ 1.76
HPS4-213ENST00000483631 RRP7AQ9Y3A4 280 aaKnown RBP26.04■■□□□ 1.76
HPS4-213ENST00000483631 IBTKQ9P2D0 1353 aaPredicted RBP26.04■■□□□ 1.76
HPS4-213ENST00000483631 TIAM2Q8IVF5 1701 aa26.03■■□□□ 1.76
HPS4-213ENST00000483631 NPR1P16066 1061 aa26.03■■□□□ 1.76
HPS4-213ENST00000483631 NYXQ9GZU5 481 aa26.03■■□□□ 1.76
HPS4-213ENST00000483631 C21orf2O43822 256 aa26.02■■□□□ 1.76
HPS4-213ENST00000483631 PRELPP51888 382 aa26.02■■□□□ 1.76
HPS4-213ENST00000483631 PRPF40BQ6NWY9 871 aaKnown RBP26.02■■□□□ 1.76
HPS4-213ENST00000483631 RBM46Q8TBY0 533 aaKnown RBP26.02■■□□□ 1.76
HPS4-213ENST00000483631 RIC1Q4ADV7 1423 aa26■■□□□ 1.75
HPS4-213ENST00000483631 GLTPD2A6NH11 291 aa26■■□□□ 1.75
HPS4-213ENST00000483631 TTLL7Q6ZT98 887 aa26■■□□□ 1.75
HPS4-213ENST00000483631 MYL6BP14649 208 aa25.99■■□□□ 1.75
HPS4-213ENST00000483631 IFFO2Q5TF58 517 aa25.99■■□□□ 1.75
HPS4-213ENST00000483631 CCDC146Q8IYE0 955 aa25.99■■□□□ 1.75
HPS4-213ENST00000483631 C16orf71Q8IYS4 520 aaPredicted RBP25.99■■□□□ 1.75
HPS4-213ENST00000483631 NGEFQ8N5V2 710 aa25.99■■□□□ 1.75
HPS4-213ENST00000483631 TAOK3Q9H2K8 898 aa25.99■■□□□ 1.75
HPS4-213ENST00000483631 ADAMTS8Q9UP79 889 aa25.99■■□□□ 1.75
HPS4-213ENST00000483631 CHL1O00533 1208 aa25.98■■□□□ 1.75
HPS4-213ENST00000483631 GTF2E1P29083 439 aaPredicted RBP25.98■■□□□ 1.75
HPS4-213ENST00000483631 GIGYF2Q6Y7W6 1299 aaKnown RBP25.98■■□□□ 1.75
HPS4-213ENST00000483631 LRP10Q7Z4F1 713 aa25.98■■□□□ 1.75
HPS4-213ENST00000483631 TRIM35Q9UPQ4 493 aa25.98■■□□□ 1.75
HPS4-213ENST00000483631 PDIA6Q15084 440 aa25.97■■□□□ 1.75
HPS4-213ENST00000483631 C7orf43Q8WVR3 580 aa25.97■■□□□ 1.75
HPS4-213ENST00000483631 CEP350Q5VT06 3117 aa25.96■■□□□ 1.75
HPS4-213ENST00000483631 ALDH1B1P30837 517 aa25.96■■□□□ 1.75
HPS4-213ENST00000483631 FSTL1Q12841 308 aa25.96■■□□□ 1.75
HPS4-213ENST00000483631 NEUROD2Q15784 382 aa25.96■■□□□ 1.75
HPS4-213ENST00000483631 ZNF34Q8IZ26 560 aa25.96■■□□□ 1.75
HPS4-213ENST00000483631 ZEB1P37275 1124 aaPredicted RBP25.95■■□□□ 1.74
HPS4-213ENST00000483631 APLP1P51693 650 aa25.95■■□□□ 1.74
HPS4-213ENST00000483631 CRY2Q49AN0 593 aa25.95■■□□□ 1.74
HPS4-213ENST00000483631 RRAGCQ9HB90 399 aa25.95■■□□□ 1.74
HPS4-213ENST00000483631 FAM177BA6PVY3 158 aa25.94■■□□□ 1.74
HPS4-213ENST00000483631 HOXB7P09629 217 aa25.94■■□□□ 1.74
HPS4-213ENST00000483631 EIF2S2P20042 333 aaKnown RBP25.94■■□□□ 1.74
HPS4-213ENST00000483631 CCDC93Q567U6 631 aa25.94■■□□□ 1.74
HPS4-213ENST00000483631 DPY19L2Q6NUT2 758 aa25.94■■□□□ 1.74
HPS4-213ENST00000483631 ZBTB3Q9H5J0 574 aa25.94■■□□□ 1.74
HPS4-213ENST00000483631 ZNF219Q9P2Y4 722 aaPredicted RBP25.94■■□□□ 1.74
HPS4-213ENST00000483631 ERFEQ4G0M1 354 aa25.93■■□□□ 1.74
HPS4-213ENST00000483631 PARP10Q53GL7 1025 aa25.93■■□□□ 1.74
HPS4-213ENST00000483631 WDR90Q96KV7 1748 aa25.93■■□□□ 1.74
HPS4-213ENST00000483631 UBN2Q6ZU65 1347 aa25.92■■□□□ 1.74
HPS4-213ENST00000483631 VEGFAP15692 232 aaPredicted RBP25.92■■□□□ 1.74
HPS4-213ENST00000483631 ABCC12Q96J65 1359 aa25.92■■□□□ 1.74
HPS4-213ENST00000483631 PPP1R42Q7Z4L9 355 aa25.91■■□□□ 1.74
HPS4-213ENST00000483631 CFAP44Q96MT7 982 aa25.91■■□□□ 1.74
HPS4-213ENST00000483631 ANKRD36CQ5JPF3 1778 aa25.91■■□□□ 1.74
HPS4-213ENST00000483631 RNF123Q5XPI4 1314 aa25.9■■□□□ 1.74
HPS4-213ENST00000483631 GPTP24298 496 aa25.9■■□□□ 1.74
HPS4-213ENST00000483631 HSP90AB3PQ58FF7 597 aa25.9■■□□□ 1.74
HPS4-213ENST00000483631 RTKN2Q8IZC4 609 aa25.9■■□□□ 1.74
HPS4-213ENST00000483631 DDX21Q9NR30 783 aaKnown RBP eCLIP25.9■■□□□ 1.74
HPS4-213ENST00000483631 NTSR2O95665 410 aa25.89■■□□□ 1.74
HPS4-213ENST00000483631 HOXA10P31260 410 aaPredicted RBP25.89■■□□□ 1.74
HPS4-213ENST00000483631 PROSER3Q2NL68 480 aa25.89■■□□□ 1.74
HPS4-213ENST00000483631 SUSD4Q5VX71 490 aa25.89■■□□□ 1.74
HPS4-213ENST00000483631 NUTM1Q86Y26 1132 aa25.89■■□□□ 1.74
HPS4-213ENST00000483631 FKBP4Q02790 459 aaKnown RBP eCLIP25.88■■□□□ 1.73
HPS4-213ENST00000483631 CC2D2BQ6DHV5 1058 aa25.88■■□□□ 1.73
HPS4-213ENST00000483631 SMC1BQ8NDV3 1235 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms