RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 ZNF652Q9Y2D9 606 aa27.65■■■□□ 2.02
LIME1-204ENST00000476183 RGL2O15211 777 aa27.64■■■□□ 2.02
LIME1-204ENST00000476183 LRP10Q7Z4F1 713 aa27.64■■■□□ 2.02
LIME1-204ENST00000476183 ARFGEF1Q9Y6D6 1849 aa27.64■■■□□ 2.01
LIME1-204ENST00000476183 SENP3-EIF4A1A0A087X0R7 540 aa27.63■■■□□ 2.01
LIME1-204ENST00000476183 ZNF853P0CG23 659 aa27.63■■■□□ 2.01
LIME1-204ENST00000476183 PROSER3Q2NL68 480 aa27.63■■■□□ 2.01
LIME1-204ENST00000476183 DALRD3Q5D0E6 543 aaKnown RBP27.63■■■□□ 2.01
LIME1-204ENST00000476183 DLEC1Q9Y238 1755 aa27.63■■■□□ 2.01
LIME1-204ENST00000476183 CNBD1Q8NA66 436 aa27.62■■■□□ 2.01
LIME1-204ENST00000476183 NECTIN2Q92692 538 aa27.62■■■□□ 2.01
LIME1-204ENST00000476183 MBIPQ9NS73 344 aa27.62■■■□□ 2.01
LIME1-204ENST00000476183 MAP3K15Q6ZN16 1313 aa27.62■■■□□ 2.01
LIME1-204ENST00000476183 ANXA1P04083 346 aa27.61■■■□□ 2.01
LIME1-204ENST00000476183 C2CD5Q86YS7 1000 aa27.61■■■□□ 2.01
LIME1-204ENST00000476183 BRIP1Q9BX63 1249 aa27.61■■■□□ 2.01
LIME1-204ENST00000476183 NIP7Q9Y221 180 aaKnown RBP eCLIP27.61■■■□□ 2.01
LIME1-204ENST00000476183 NUP98P52948 1817 aa27.61■■■□□ 2.01
LIME1-204ENST00000476183 ERVV-1B6SEH8 477 aa27.6■■■□□ 2.01
LIME1-204ENST00000476183 KIF6Q6ZMV9 814 aa27.59■■■□□ 2.01
LIME1-204ENST00000476183 COL11A2P13942 1736 aaPredicted RBP27.58■■■□□ 2.01
LIME1-204ENST00000476183 H0YIN7 160 aa27.58■■■□□ 2.01
LIME1-204ENST00000476183 ARHGAP27Q6ZUM4 889 aa27.58■■■□□ 2.01
LIME1-204ENST00000476183 NBPF5PQ86XG9 351 aaPredicted RBP27.58■■■□□ 2.01
LIME1-204ENST00000476183 ZBTB3Q9H5J0 574 aa27.58■■■□□ 2.01
LIME1-204ENST00000476183 IFT57Q9NWB7 429 aa27.58■■■□□ 2.01
LIME1-204ENST00000476183 ADCY9O60503 1353 aa27.57■■■□□ 2
LIME1-204ENST00000476183 NPHP1O15259 732 aa27.56■■■□□ 2
LIME1-204ENST00000476183 PDE6BP35913 854 aa27.56■■■□□ 2
LIME1-204ENST00000476183 ST5P78524 1137 aa27.56■■■□□ 2
LIME1-204ENST00000476183 CALD1Q05682 793 aaKnown RBP27.56■■■□□ 2
LIME1-204ENST00000476183 FAM177BA6PVY3 158 aa27.55■■■□□ 2
LIME1-204ENST00000476183 HOXB7P09629 217 aa27.55■■■□□ 2
LIME1-204ENST00000476183 GNAI1P63096 354 aa27.55■■■□□ 2
LIME1-204ENST00000476183 ATP10DQ9P241 1426 aa27.55■■■□□ 2
LIME1-204ENST00000476183 DUSP27Q5VZP5 1158 aa27.54■■■□□ 2
LIME1-204ENST00000476183 TTLL6Q8N841 843 aa27.54■■■□□ 2
LIME1-204ENST00000476183 CCDC27Q2M243 656 aa27.53■■■□□ 2
LIME1-204ENST00000476183 HDGFL1Q5TGJ6 251 aa27.53■■■□□ 2
LIME1-204ENST00000476183 TPTE2Q6XPS3 522 aa27.53■■■□□ 2
LIME1-204ENST00000476183 DDX21Q9NR30 783 aaKnown RBP eCLIP27.53■■■□□ 2
LIME1-204ENST00000476183 UBN2Q6ZU65 1347 aa27.52■■■□□ 2
LIME1-204ENST00000476183 GIGYF2Q6Y7W6 1299 aaKnown RBP27.52■■■□□ 2
LIME1-204ENST00000476183 COPS6Q7L5N1 327 aa27.52■■■□□ 2
LIME1-204ENST00000476183 XAGE3Q8WTP9 111 aa27.52■■■□□ 2
LIME1-204ENST00000476183 ZNF622Q969S3 477 aaKnown RBP eCLIP27.52■■■□□ 2
LIME1-204ENST00000476183 CHPF2Q9P2E5 772 aa27.52■■■□□ 2
LIME1-204ENST00000476183 PDZRN3Q9UPQ7 1066 aa27.52■■■□□ 2
LIME1-204ENST00000476183 GPTP24298 496 aa27.51■■□□□ 1.99
LIME1-204ENST00000476183 WWC1Q8IX03 1113 aa27.51■■□□□ 1.99
LIME1-204ENST00000476183 ZNF34Q8IZ26 560 aa27.51■■□□□ 1.99
LIME1-204ENST00000476183 AIMP1Q12904 312 aaKnown RBP27.5■■□□□ 1.99
LIME1-204ENST00000476183 SRGNP10124 158 aa27.49■■□□□ 1.99
LIME1-204ENST00000476183 C8orf58Q8NAV2 365 aa27.48■■□□□ 1.99
LIME1-204ENST00000476183 ABCC12Q96J65 1359 aa27.48■■□□□ 1.99
LIME1-204ENST00000476183 KLRG2A4D1S0 409 aaPredicted RBP27.47■■□□□ 1.99
LIME1-204ENST00000476183 ELL2O00472 640 aaPredicted RBP27.47■■□□□ 1.99
LIME1-204ENST00000476183 SUSD4Q5VX71 490 aa27.47■■□□□ 1.99
LIME1-204ENST00000476183 NUTM1Q86Y26 1132 aa27.47■■□□□ 1.99
LIME1-204ENST00000476183 NCBP3Q53F19 620 aaKnown RBP27.46■■□□□ 1.99
LIME1-204ENST00000476183 STYK1Q6J9G0 422 aa27.46■■□□□ 1.99
LIME1-204ENST00000476183 FAM9BQ8IZU0 186 aa27.46■■□□□ 1.99
LIME1-204ENST00000476183 TSR2Q969E8 191 aaKnown RBP27.46■■□□□ 1.99
LIME1-204ENST00000476183 MASTLQ96GX5 879 aa27.46■■□□□ 1.99
LIME1-204ENST00000476183 DBF4Q9UBU7 674 aaPredicted RBP27.46■■□□□ 1.99
LIME1-204ENST00000476183 TNRC6CQ9HCJ0 1690 aaKnown RBP27.46■■□□□ 1.99
LIME1-204ENST00000476183 SBF1O95248 1867 aa27.45■■□□□ 1.99
LIME1-204ENST00000476183 GTF2E1P29083 439 aaPredicted RBP27.45■■□□□ 1.98
LIME1-204ENST00000476183 ERFEQ4G0M1 354 aa27.45■■□□□ 1.98
LIME1-204ENST00000476183 NYXQ9GZU5 481 aa27.45■■□□□ 1.98
LIME1-204ENST00000476183 SLX4Q8IY92 1834 aa27.45■■□□□ 1.98
LIME1-204ENST00000476183 IBTKQ9P2D0 1353 aaPredicted RBP27.45■■□□□ 1.98
LIME1-204ENST00000476183 CACNA1SQ13698 1873 aa27.44■■□□□ 1.98
LIME1-204ENST00000476183 RASSF7Q02833 373 aa27.44■■□□□ 1.98
LIME1-204ENST00000476183 C9orf131Q5VYM1 1079 aa27.44■■□□□ 1.98
LIME1-204ENST00000476183 SALL2Q9Y467 1007 aaPredicted RBP27.44■■□□□ 1.98
LIME1-204ENST00000476183 NTSR2O95665 410 aa27.43■■□□□ 1.98
LIME1-204ENST00000476183 TSPYL6Q8N831 410 aa27.43■■□□□ 1.98
LIME1-204ENST00000476183 ZNF526Q8TF50 670 aaPredicted RBP27.43■■□□□ 1.98
LIME1-204ENST00000476183 CNKSR1Q969H4 720 aa27.43■■□□□ 1.98
LIME1-204ENST00000476183 ZNF219Q9P2Y4 722 aaPredicted RBP27.43■■□□□ 1.98
LIME1-204ENST00000476183 ANKRD36CQ5JPF3 1778 aa27.43■■□□□ 1.98
LIME1-204ENST00000476183 ARFGEF2Q9Y6D5 1785 aa27.43■■□□□ 1.98
LIME1-204ENST00000476183 C21orf2O43822 256 aa27.42■■□□□ 1.98
LIME1-204ENST00000476183 NPR1P16066 1061 aa27.41■■□□□ 1.98
LIME1-204ENST00000476183 PRELPP51888 382 aa27.41■■□□□ 1.98
LIME1-204ENST00000476183 PARP10Q53GL7 1025 aa27.41■■□□□ 1.98
LIME1-204ENST00000476183 PRPF40BQ6NWY9 871 aaKnown RBP27.41■■□□□ 1.98
LIME1-204ENST00000476183 HYPKQ9NX55 129 aa27.41■■□□□ 1.98
LIME1-204ENST00000476183 IL16Q14005 1332 aa27.41■■□□□ 1.98
LIME1-204ENST00000476183 NFKBIEO00221 500 aa27.4■■□□□ 1.98
LIME1-204ENST00000476183 TCIRG1Q13488 830 aa27.39■■□□□ 1.98
LIME1-204ENST00000476183 HSP90AB3PQ58FF7 597 aa27.39■■□□□ 1.98
LIME1-204ENST00000476183 PPP1R42Q7Z4L9 355 aa27.39■■□□□ 1.98
LIME1-204ENST00000476183 PLBD2Q8NHP8 589 aa27.39■■□□□ 1.98
LIME1-204ENST00000476183 RNF181Q9P0P0 153 aa27.39■■□□□ 1.98
LIME1-204ENST00000476183 CRY2Q49AN0 593 aa27.38■■□□□ 1.97
LIME1-204ENST00000476183 ANKRD13DQ6ZTN6 518 aa27.38■■□□□ 1.97
LIME1-204ENST00000476183 NLRP10Q86W26 655 aa27.38■■□□□ 1.97
LIME1-204ENST00000476183 GPBP1L1Q9HC44 474 aaPredicted RBP27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms