RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 SPDYE2BA6NHP3 402 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 GNPATO15228 680 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 NEFLP07196 543 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 SPDYE6P0CI01 402 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 FKBP5Q13451 457 aaPredicted RBP10.34□□□□□ -0.75
HDAC6-216ENST00000468949 SPDYE2Q495Y8 402 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 FTSJ3Q8IY81 847 aaKnown RBP10.34□□□□□ -0.75
HDAC6-216ENST00000468949 LINC00116Q8NCU8 138 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 SLC4A9Q96Q91 983 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 SGIP1Q9BQI5 828 aa10.34□□□□□ -0.75
HDAC6-216ENST00000468949 RTCBQ9Y3I0 505 aaKnown RBP10.34□□□□□ -0.75
HDAC6-216ENST00000468949 PTPRCP08575 1304 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 A0A087WZG4 1122 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 A1BGP04217 495 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 MS4A1P11836 297 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 SSFA2P28290 1259 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 PIP4K2AP48426 406 aaPredicted RBP10.33□□□□□ -0.76
HDAC6-216ENST00000468949 AIMP1Q12904 312 aaKnown RBP10.33□□□□□ -0.76
HDAC6-216ENST00000468949 FLIIQ13045 1269 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 ZKSCAN2Q63HK3 967 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 ZBTB1Q9Y2K1 713 aa10.33□□□□□ -0.76
HDAC6-216ENST00000468949 COL15A1P39059 1388 aa10.32□□□□□ -0.76
HDAC6-216ENST00000468949 BCAR3O75815 825 aa10.32□□□□□ -0.76
HDAC6-216ENST00000468949 PHF14O94880 888 aa10.32□□□□□ -0.76
HDAC6-216ENST00000468949 ANXA1P04083 346 aa10.32□□□□□ -0.76
HDAC6-216ENST00000468949 POLD1P28340 1107 aa10.32□□□□□ -0.76
HDAC6-216ENST00000468949 IL6STP40189 918 aaPredicted RBP10.32□□□□□ -0.76
HDAC6-216ENST00000468949 RRP1P56182 461 aaKnown RBP10.32□□□□□ -0.76
HDAC6-216ENST00000468949 RC3H1Q5TC82 1133 aaKnown RBP10.32□□□□□ -0.76
HDAC6-216ENST00000468949 COL23A1Q86Y22 540 aaPredicted RBP10.32□□□□□ -0.76
HDAC6-216ENST00000468949 MRPL50Q8N5N7 158 aaKnown RBP10.32□□□□□ -0.76
HDAC6-216ENST00000468949 XAGE3Q8WTP9 111 aa10.32□□□□□ -0.76
HDAC6-216ENST00000468949 API5Q9BZZ5 524 aaKnown RBP10.32□□□□□ -0.76
HDAC6-216ENST00000468949 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.31□□□□□ -0.76
HDAC6-216ENST00000468949 PROSER3Q2NL68 480 aa10.31□□□□□ -0.76
HDAC6-216ENST00000468949 RIC3Q7Z5B4 369 aa10.31□□□□□ -0.76
HDAC6-216ENST00000468949 NOB1Q9ULX3 412 aaKnown RBP10.31□□□□□ -0.76
HDAC6-216ENST00000468949 SUPT16HQ9Y5B9 1047 aaKnown RBP10.31□□□□□ -0.76
HDAC6-216ENST00000468949 ZPR1O75312 459 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 RPS6KA4O75676 772 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 RFC4P35249 363 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 BRPF1P55201 1214 aaPredicted RBP10.3□□□□□ -0.76
HDAC6-216ENST00000468949 NEXNQ0ZGT2 675 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 INTS5Q6P9B9 1019 aaKnown RBP10.3□□□□□ -0.76
HDAC6-216ENST00000468949 ATF7IPQ6VMQ6 1270 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 COPS6Q7L5N1 327 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 DZIP3Q86Y13 1208 aaKnown RBP10.3□□□□□ -0.76
HDAC6-216ENST00000468949 FHDC1Q9C0D6 1143 aaPredicted RBP10.3□□□□□ -0.76
HDAC6-216ENST00000468949 PHAXQ9H814 394 aaKnown RBP10.3□□□□□ -0.76
HDAC6-216ENST00000468949 ZNF652Q9Y2D9 606 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 SCN7AQ01118 1682 aa10.3□□□□□ -0.76
HDAC6-216ENST00000468949 MYH14Q7Z406 1995 aaKnown RBP10.29□□□□□ -0.76
HDAC6-216ENST00000468949 NBPF26B4DH59 902 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 PDIA6Q15084 440 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 TRAPPC3LQ5T215 181 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 MSL1Q68DK7 614 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 NBPF10Q6P3W6 841 aaKnown RBP10.29□□□□□ -0.76
HDAC6-216ENST00000468949 SLC4A10Q6U841 1118 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 AMIGO3Q86WK7 504 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 NBPF15Q8N660 670 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 ARHGAP45Q92619 1136 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 SSUH2Q9Y2M2 353 aa10.29□□□□□ -0.76
HDAC6-216ENST00000468949 PLIN1O60240 522 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 HSP90AB3PQ58FF7 597 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 ANKRD13DQ6ZTN6 518 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 G2E3Q7L622 706 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 DZIP1LQ8IYY4 767 aaKnown RBP10.28□□□□□ -0.76
HDAC6-216ENST00000468949 PLBD2Q8NHP8 589 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 CLUAP1Q96AJ1 413 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 ZBTB3Q9H5J0 574 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 MAP3K2Q9Y2U5 619 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 MAP3K15Q6ZN16 1313 aa10.28□□□□□ -0.76
HDAC6-216ENST00000468949 PI4KAP2A4QPH2 592 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 NPHP1O15259 732 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 TRIM27P14373 513 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 VASPP50552 380 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-216ENST00000468949 EIF5P55010 431 aaKnown RBP10.27□□□□□ -0.77
HDAC6-216ENST00000468949 KSR2Q6VAB6 950 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 ITPRIPQ8IWB1 547 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 KLHL34Q8N239 644 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 PI4KAP1Q8N8J0 262 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 DNAAF4Q8WXU2 420 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 SYT17Q9BSW7 474 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 TBC1D2BQ9UPU7 963 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 PXDNLA1KZ92 1463 aa10.27□□□□□ -0.77
HDAC6-216ENST00000468949 KIF13BQ9NQT8 1826 aa10.26□□□□□ -0.77
HDAC6-216ENST00000468949 ERVV-1B6SEH8 477 aa10.26□□□□□ -0.77
HDAC6-216ENST00000468949 CCT4P50991 539 aaKnown RBP10.26□□□□□ -0.77
HDAC6-216ENST00000468949 TTLL7Q6ZT98 887 aa10.26□□□□□ -0.77
HDAC6-216ENST00000468949 CHMP4BQ9H444 224 aaKnown RBP10.26□□□□□ -0.77
HDAC6-216ENST00000468949 CACNA1FO60840 1977 aa10.26□□□□□ -0.77
HDAC6-216ENST00000468949 BCORQ6W2J9 1755 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 F6X3S4 739 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 PDE3AQ14432 1141 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 LRP10Q7Z4F1 713 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 ARHGEF1Q92888 912 aaKnown RBP10.25□□□□□ -0.77
HDAC6-216ENST00000468949 MYD88Q99836 296 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 SRCIN1Q9C0H9 1055 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 ABCC4O15439 1325 aa10.25□□□□□ -0.77
HDAC6-216ENST00000468949 USP42Q9H9J4 1324 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms