RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 NBPF5PQ86XG9 351 aaPredicted RBP25.02■■□□□ 1.6
COL7A1-207ENST00000467985 ERBB4Q15303 1308 aa25.02■■□□□ 1.6
COL7A1-207ENST00000467985 NEUROD2Q15784 382 aa25.01■■□□□ 1.59
COL7A1-207ENST00000467985 C9orf131Q5VYM1 1079 aa25.01■■□□□ 1.59
COL7A1-207ENST00000467985 RRP7AQ9Y3A4 280 aaKnown RBP25.01■■□□□ 1.59
COL7A1-207ENST00000467985 ERVV-1B6SEH8 477 aa25■■□□□ 1.59
COL7A1-207ENST00000467985 NIP7Q9Y221 180 aaKnown RBP eCLIP25■■□□□ 1.59
COL7A1-207ENST00000467985 TPTE2Q6XPS3 522 aa24.99■■□□□ 1.59
COL7A1-207ENST00000467985 KIF6Q6ZMV9 814 aa24.99■■□□□ 1.59
COL7A1-207ENST00000467985 ZNF622Q969S3 477 aaKnown RBP eCLIP24.99■■□□□ 1.59
COL7A1-207ENST00000467985 CCDC24Q8N4L8 307 aa24.98■■□□□ 1.59
COL7A1-207ENST00000467985 MYL6BP14649 208 aa24.97■■□□□ 1.59
COL7A1-207ENST00000467985 NGEFQ8N5V2 710 aa24.97■■□□□ 1.59
COL7A1-207ENST00000467985 RNF181Q9P0P0 153 aa24.97■■□□□ 1.59
COL7A1-207ENST00000467985 COL11A2P13942 1736 aaPredicted RBP24.97■■□□□ 1.59
COL7A1-207ENST00000467985 MAP3K15Q6ZN16 1313 aa24.96■■□□□ 1.59
COL7A1-207ENST00000467985 HLFQ16534 295 aa24.96■■□□□ 1.59
COL7A1-207ENST00000467985 STYK1Q6J9G0 422 aa24.96■■□□□ 1.59
COL7A1-207ENST00000467985 CNKSR1Q969H4 720 aa24.96■■□□□ 1.59
COL7A1-207ENST00000467985 TRIM35Q9UPQ4 493 aa24.96■■□□□ 1.59
COL7A1-207ENST00000467985 CEP350Q5VT06 3117 aa24.96■■□□□ 1.59
COL7A1-207ENST00000467985 CHL1O00533 1208 aa24.95■■□□□ 1.58
COL7A1-207ENST00000467985 SRGNP10124 158 aa24.95■■□□□ 1.58
COL7A1-207ENST00000467985 SBF1O95248 1867 aa24.95■■□□□ 1.58
COL7A1-207ENST00000467985 MASTLQ96GX5 879 aa24.94■■□□□ 1.58
COL7A1-207ENST00000467985 ZC3H4Q9UPT8 1303 aaKnown RBP24.93■■□□□ 1.58
COL7A1-207ENST00000467985 LMNB1P20700 586 aa24.93■■□□□ 1.58
COL7A1-207ENST00000467985 NYXQ9GZU5 481 aa24.93■■□□□ 1.58
COL7A1-207ENST00000467985 NUP98P52948 1817 aa24.93■■□□□ 1.58
COL7A1-207ENST00000467985 SENP3-EIF4A1A0A087X0R7 540 aa24.92■■□□□ 1.58
COL7A1-207ENST00000467985 EIF2S2P20042 333 aaKnown RBP24.92■■□□□ 1.58
COL7A1-207ENST00000467985 GTF2E1P29083 439 aaPredicted RBP24.92■■□□□ 1.58
COL7A1-207ENST00000467985 TTLL7Q6ZT98 887 aa24.92■■□□□ 1.58
COL7A1-207ENST00000467985 KLRG2A4D1S0 409 aaPredicted RBP24.91■■□□□ 1.58
COL7A1-207ENST00000467985 RASSF7Q02833 373 aa24.91■■□□□ 1.58
COL7A1-207ENST00000467985 LAS1LQ9Y4W2 734 aaKnown RBP24.91■■□□□ 1.58
COL7A1-207ENST00000467985 KDM2BQ8NHM5 1336 aa24.9■■□□□ 1.58
COL7A1-207ENST00000467985 KIF3CO14782 793 aa24.9■■□□□ 1.58
COL7A1-207ENST00000467985 C21orf2O43822 256 aa24.9■■□□□ 1.58
COL7A1-207ENST00000467985 NPR1P16066 1061 aa24.9■■□□□ 1.58
COL7A1-207ENST00000467985 SOGA3Q5TF21 947 aa24.9■■□□□ 1.58
COL7A1-207ENST00000467985 ZBTB3Q9H5J0 574 aa24.9■■□□□ 1.58
COL7A1-207ENST00000467985 FAM177BA6PVY3 158 aa24.89■■□□□ 1.58
COL7A1-207ENST00000467985 PDIA6Q15084 440 aa24.89■■□□□ 1.58
COL7A1-207ENST00000467985 ARFGEF2Q9Y6D5 1785 aa24.89■■□□□ 1.57
COL7A1-207ENST00000467985 IBTKQ9P2D0 1353 aaPredicted RBP24.89■■□□□ 1.57
COL7A1-207ENST00000467985 ZNF316A6NFI3 1004 aaPredicted RBP24.88■■□□□ 1.57
COL7A1-207ENST00000467985 CALD1Q05682 793 aaKnown RBP24.88■■□□□ 1.57
COL7A1-207ENST00000467985 PRPF40BQ6NWY9 871 aaKnown RBP24.88■■□□□ 1.57
COL7A1-207ENST00000467985 GIGYF2Q6Y7W6 1299 aaKnown RBP24.88■■□□□ 1.57
COL7A1-207ENST00000467985 CFAP44Q96MT7 982 aa24.88■■□□□ 1.57
COL7A1-207ENST00000467985 NFKBIEO00221 500 aa24.87■■□□□ 1.57
COL7A1-207ENST00000467985 HOXB7P09629 217 aa24.87■■□□□ 1.57
COL7A1-207ENST00000467985 LRP10Q7Z4F1 713 aa24.87■■□□□ 1.57
COL7A1-207ENST00000467985 APAF1O14727 1248 aa24.86■■□□□ 1.57
COL7A1-207ENST00000467985 ZNF219Q9P2Y4 722 aaPredicted RBP24.86■■□□□ 1.57
COL7A1-207ENST00000467985 SLX4Q8IY92 1834 aa24.86■■□□□ 1.57
COL7A1-207ENST00000467985 LTBP3Q9NS15 1303 aa24.86■■□□□ 1.57
COL7A1-207ENST00000467985 FER1L6Q2WGJ9 1857 aa24.85■■□□□ 1.57
COL7A1-207ENST00000467985 PARP10Q53GL7 1025 aa24.85■■□□□ 1.57
COL7A1-207ENST00000467985 ZNF34Q8IZ26 560 aa24.85■■□□□ 1.57
COL7A1-207ENST00000467985 NMRK2Q9NPI5 230 aa24.85■■□□□ 1.57
COL7A1-207ENST00000467985 DDX21Q9NR30 783 aaKnown RBP eCLIP24.85■■□□□ 1.57
COL7A1-207ENST00000467985 CACNA1SQ13698 1873 aa24.84■■□□□ 1.57
COL7A1-207ENST00000467985 GPTP24298 496 aa24.84■■□□□ 1.57
COL7A1-207ENST00000467985 PROSER3Q2NL68 480 aa24.84■■□□□ 1.57
COL7A1-207ENST00000467985 TOMM70O94826 608 aa24.83■■□□□ 1.57
COL7A1-207ENST00000467985 ALDH1B1P30837 517 aa24.83■■□□□ 1.57
COL7A1-207ENST00000467985 PPP1R42Q7Z4L9 355 aa24.83■■□□□ 1.57
COL7A1-207ENST00000467985 NECTIN2Q92692 538 aa24.83■■□□□ 1.57
COL7A1-207ENST00000467985 TAOK3Q9H2K8 898 aa24.83■■□□□ 1.57
COL7A1-207ENST00000467985 RIC1Q4ADV7 1423 aa24.83■■□□□ 1.57
COL7A1-207ENST00000467985 CCDC88AQ3V6T2 1871 aa24.83■■□□□ 1.56
COL7A1-207ENST00000467985 UBN2Q6ZU65 1347 aa24.83■■□□□ 1.56
COL7A1-207ENST00000467985 TNRC6CQ9HCJ0 1690 aaKnown RBP24.82■■□□□ 1.56
COL7A1-207ENST00000467985 PRELPP51888 382 aa24.82■■□□□ 1.56
COL7A1-207ENST00000467985 IFT57Q9NWB7 429 aa24.82■■□□□ 1.56
COL7A1-207ENST00000467985 TIAM2Q8IVF5 1701 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 ANXA1P04083 346 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 ZNF853P0CG23 659 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 GNAI1P63096 354 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 KRT24Q2M2I5 525 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 CRY2Q49AN0 593 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 ERFEQ4G0M1 354 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 HSP90AB3PQ58FF7 597 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 HDGFL1Q5TGJ6 251 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 SUSD4Q5VX71 490 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 COPS6Q7L5N1 327 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 NUTM1Q86Y26 1132 aa24.81■■□□□ 1.56
COL7A1-207ENST00000467985 C16orf71Q8IYS4 520 aaPredicted RBP24.81■■□□□ 1.56
COL7A1-207ENST00000467985 ABCC12Q96J65 1359 aa24.8■■□□□ 1.56
COL7A1-207ENST00000467985 CCDC93Q567U6 631 aa24.8■■□□□ 1.56
COL7A1-207ENST00000467985 XAGE3Q8WTP9 111 aa24.8■■□□□ 1.56
COL7A1-207ENST00000467985 C7orf43Q8WVR3 580 aa24.8■■□□□ 1.56
COL7A1-207ENST00000467985 MBIPQ9NS73 344 aa24.8■■□□□ 1.56
COL7A1-207ENST00000467985 DICER1Q9UPY3 1922 aaKnown RBP24.79■■□□□ 1.56
COL7A1-207ENST00000467985 GLTPD2A6NH11 291 aa24.79■■□□□ 1.56
COL7A1-207ENST00000467985 ANP32CO43423 234 aa24.79■■□□□ 1.56
COL7A1-207ENST00000467985 NTSR2O95665 410 aa24.79■■□□□ 1.56
COL7A1-207ENST00000467985 HSPA6P17066 643 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms