RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 SSUH2Q9Y2M2 353 aa16.98■□□□□ 0.31
COL28A1-206ENST00000465339 C10orf71Q711Q0 1435 aa16.97■□□□□ 0.31
COL28A1-206ENST00000465339 ZNF652Q9Y2D9 606 aa16.97■□□□□ 0.31
COL28A1-206ENST00000465339 AFDNP55196 1824 aaKnown RBP16.97■□□□□ 0.31
COL28A1-206ENST00000465339 BCORQ6W2J9 1755 aa16.97■□□□□ 0.31
COL28A1-206ENST00000465339 SERPINB2P05120 415 aa16.96■□□□□ 0.31
COL28A1-206ENST00000465339 EIF2S2P20042 333 aaKnown RBP16.96■□□□□ 0.31
COL28A1-206ENST00000465339 PELP1Q8IZL8 1130 aaKnown RBP16.96■□□□□ 0.31
COL28A1-206ENST00000465339 NRXN2Q9P2S2 1712 aa16.96■□□□□ 0.3
COL28A1-206ENST00000465339 SPDYE4A6NLX3 237 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 GRIN3BO60391 1043 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 HOXB7P09629 217 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 TBC1D9BQ66K14 1250 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 BICDL1Q6ZP65 573 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 FAM9BQ8IZU0 186 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 SETDB2Q96T68 719 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 MBIPQ9NS73 344 aa16.95■□□□□ 0.3
COL28A1-206ENST00000465339 N4BP2Q86UW6 1770 aaPredicted RBP16.94■□□□□ 0.3
COL28A1-206ENST00000465339 CHD4Q14839 1912 aa16.94■□□□□ 0.3
COL28A1-206ENST00000465339 MYL6BP14649 208 aa16.94■□□□□ 0.3
COL28A1-206ENST00000465339 WWC1Q8IX03 1113 aa16.94■□□□□ 0.3
COL28A1-206ENST00000465339 KIAA1551Q9HCM1 1747 aa16.93■□□□□ 0.3
COL28A1-206ENST00000465339 A0A0G2JLW4 131 aa16.93■□□□□ 0.3
COL28A1-206ENST00000465339 ERVV-1B6SEH8 477 aa16.93■□□□□ 0.3
COL28A1-206ENST00000465339 REM2Q8IYK8 340 aaPredicted RBP16.93■□□□□ 0.3
COL28A1-206ENST00000465339 NGEFQ8N5V2 710 aa16.93■□□□□ 0.3
COL28A1-206ENST00000465339 PXDNLA1KZ92 1463 aa16.93■□□□□ 0.3
COL28A1-206ENST00000465339 CARMIL3Q8ND23 1372 aa16.92■□□□□ 0.3
COL28A1-206ENST00000465339 NUP98P52948 1817 aa16.92■□□□□ 0.3
COL28A1-206ENST00000465339 PDIA6Q15084 440 aa16.92■□□□□ 0.3
COL28A1-206ENST00000465339 KRT24Q2M2I5 525 aa16.92■□□□□ 0.3
COL28A1-206ENST00000465339 KIF6Q6ZMV9 814 aa16.92■□□□□ 0.3
COL28A1-206ENST00000465339 IL16Q14005 1332 aa16.92■□□□□ 0.3
COL28A1-206ENST00000465339 DPEP1P16444 411 aa16.91■□□□□ 0.3
COL28A1-206ENST00000465339 YBX3P16989 372 aaKnown RBP eCLIP16.91■□□□□ 0.3
COL28A1-206ENST00000465339 DUSP27Q5VZP5 1158 aa16.91■□□□□ 0.3
COL28A1-206ENST00000465339 CHMP4AQ9BY43 222 aa16.91■□□□□ 0.3
COL28A1-206ENST00000465339 MAP3K15Q6ZN16 1313 aa16.91■□□□□ 0.3
COL28A1-206ENST00000465339 CCER2I3L3R5 266 aa16.9■□□□□ 0.3
COL28A1-206ENST00000465339 HDGFL1Q5TGJ6 251 aa16.9■□□□□ 0.3
COL28A1-206ENST00000465339 WDR63Q8IWG1 891 aa16.9■□□□□ 0.3
COL28A1-206ENST00000465339 DDX21Q9NR30 783 aaKnown RBP eCLIP16.9■□□□□ 0.3
COL28A1-206ENST00000465339 BRCA1P38398 1863 aaKnown RBP16.89■□□□□ 0.29
COL28A1-206ENST00000465339 SENP3-EIF4A1A0A087X0R7 540 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 KCNA3P22001 575 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 HLFQ16534 295 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 TTLL7Q6ZT98 887 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 LRP10Q7Z4F1 713 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 NECTIN2Q92692 538 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 PIM2Q9P1W9 311 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 DBF4Q9UBU7 674 aaPredicted RBP16.89■□□□□ 0.29
COL28A1-206ENST00000465339 PDZRN3Q9UPQ7 1066 aa16.89■□□□□ 0.29
COL28A1-206ENST00000465339 NIP7Q9Y221 180 aaKnown RBP eCLIP16.89■□□□□ 0.29
COL28A1-206ENST00000465339 NPHP1O15259 732 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 YY1P25490 414 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 PDE6BP35913 854 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 PROSER3Q2NL68 480 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 PRR5LQ6MZQ0 368 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 TPTE2Q6XPS3 522 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 CNBD1Q8NA66 436 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 BRIP1Q9BX63 1249 aa16.88■□□□□ 0.29
COL28A1-206ENST00000465339 GIGYF2Q6Y7W6 1299 aaKnown RBP16.87■□□□□ 0.29
COL28A1-206ENST00000465339 COPS6Q7L5N1 327 aa16.87■□□□□ 0.29
COL28A1-206ENST00000465339 NBPF5PQ86XG9 351 aaPredicted RBP16.87■□□□□ 0.29
COL28A1-206ENST00000465339 ZBTB3Q9H5J0 574 aa16.87■□□□□ 0.29
COL28A1-206ENST00000465339 SALL2Q9Y467 1007 aaPredicted RBP16.87■□□□□ 0.29
COL28A1-206ENST00000465339 H0YIN7 160 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 ELL2O00472 640 aaPredicted RBP16.86■□□□□ 0.29
COL28A1-206ENST00000465339 ANXA1P04083 346 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 CHRNA5P30532 468 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 ST5P78524 1137 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 C8orf58Q8NAV2 365 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 HYPKQ9NX55 129 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 CHPF2Q9P2E5 772 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 WWC3Q9ULE0 1092 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 BCS1LQ9Y276 419 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 ANKRD31Q8N7Z5 1873 aa16.86■□□□□ 0.29
COL28A1-206ENST00000465339 ARFGEF1Q9Y6D6 1849 aa16.85■□□□□ 0.29
COL28A1-206ENST00000465339 DALRD3Q5D0E6 543 aaKnown RBP16.85■□□□□ 0.29
COL28A1-206ENST00000465339 C2CD5Q86YS7 1000 aa16.85■□□□□ 0.29
COL28A1-206ENST00000465339 XAGE3Q8WTP9 111 aa16.85■□□□□ 0.29
COL28A1-206ENST00000465339 ATP10DQ9P241 1426 aa16.85■□□□□ 0.29
COL28A1-206ENST00000465339 DLEC1Q9Y238 1755 aa16.84■□□□□ 0.29
COL28A1-206ENST00000465339 AIMP1Q12904 312 aaKnown RBP16.84■□□□□ 0.29
COL28A1-206ENST00000465339 DIEXFQ68CQ4 756 aaKnown RBP16.84■□□□□ 0.29
COL28A1-206ENST00000465339 ZNF34Q8IZ26 560 aa16.84■□□□□ 0.29
COL28A1-206ENST00000465339 TSR2Q969E8 191 aaKnown RBP16.84■□□□□ 0.29
COL28A1-206ENST00000465339 NYXQ9GZU5 481 aa16.84■□□□□ 0.29
COL28A1-206ENST00000465339 HSP90AB3PQ58FF7 597 aa16.83■□□□□ 0.28
COL28A1-206ENST00000465339 CCDC30Q5VVM6 783 aa16.83■□□□□ 0.28
COL28A1-206ENST00000465339 GTF2E1P29083 439 aaPredicted RBP16.82■□□□□ 0.28
COL28A1-206ENST00000465339 PARP10Q53GL7 1025 aa16.82■□□□□ 0.28
COL28A1-206ENST00000465339 ANKRD13DQ6ZTN6 518 aa16.82■□□□□ 0.28
COL28A1-206ENST00000465339 CCDC24Q8N4L8 307 aa16.82■□□□□ 0.28
COL28A1-206ENST00000465339 PLBD2Q8NHP8 589 aa16.82■□□□□ 0.28
COL28A1-206ENST00000465339 ANKRD36CQ5JPF3 1778 aa16.82■□□□□ 0.28
COL28A1-206ENST00000465339 IBTKQ9P2D0 1353 aaPredicted RBP16.81■□□□□ 0.28
COL28A1-206ENST00000465339 FAM177BA6PVY3 158 aa16.81■□□□□ 0.28
COL28A1-206ENST00000465339 GPTP24298 496 aa16.81■□□□□ 0.28
COL28A1-206ENST00000465339 GOLGA2Q08379 1002 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms