RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 CICQ96RK0 1608 aaPredicted RBP12.49□□□□□ -0.41
PTPRD-207ENST00000463477 MYH14Q7Z406 1995 aaKnown RBP12.49□□□□□ -0.41
PTPRD-207ENST00000463477 SNRPA1P09661 255 aaKnown RBP12.48□□□□□ -0.41
PTPRD-207ENST00000463477 RFC4P35249 363 aa12.48□□□□□ -0.41
PTPRD-207ENST00000463477 COL5A3P25940 1745 aaPredicted RBP12.48□□□□□ -0.41
PTPRD-207ENST00000463477 NLGN1Q8N2Q7 840 aa12.48□□□□□ -0.41
PTPRD-207ENST00000463477 ARHGAP45Q92619 1136 aa12.48□□□□□ -0.41
PTPRD-207ENST00000463477 USP16Q9Y5T5 823 aa12.48□□□□□ -0.41
PTPRD-207ENST00000463477 UBR2Q8IWV8 1755 aa12.47□□□□□ -0.41
PTPRD-207ENST00000463477 EIF4A1P60842 406 aaKnown RBP12.47□□□□□ -0.41
PTPRD-207ENST00000463477 CHMP4BQ9H444 224 aaKnown RBP12.47□□□□□ -0.41
PTPRD-207ENST00000463477 ZBTB1Q9Y2K1 713 aa12.47□□□□□ -0.41
PTPRD-207ENST00000463477 SOS1Q07889 1333 aaPredicted RBP12.47□□□□□ -0.41
PTPRD-207ENST00000463477 TJP1Q07157 1748 aa12.46□□□□□ -0.41
PTPRD-207ENST00000463477 EIF5P55010 431 aaKnown RBP12.46□□□□□ -0.41
PTPRD-207ENST00000463477 MSL1Q68DK7 614 aa12.46□□□□□ -0.41
PTPRD-207ENST00000463477 CHL1O00533 1208 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 GIGYF1O75420 1035 aaPredicted RBP12.45□□□□□ -0.42
PTPRD-207ENST00000463477 GYS1P13807 737 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 CFAP44Q96MT7 982 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 SYT17Q9BSW7 474 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 FHDC1Q9C0D6 1143 aaPredicted RBP12.45□□□□□ -0.42
PTPRD-207ENST00000463477 NOB1Q9ULX3 412 aaKnown RBP12.45□□□□□ -0.42
PTPRD-207ENST00000463477 PDZRN3Q9UPQ7 1066 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 COL24A1Q17RW2 1714 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 PRAMEF22A3QJZ6 481 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 VAMP4O75379 141 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 A1BGP04217 495 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 IL6STP40189 918 aaPredicted RBP12.45□□□□□ -0.42
PTPRD-207ENST00000463477 ZBTB40Q9NUA8 1239 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 TSPYL4Q9UJ04 414 aa12.45□□□□□ -0.42
PTPRD-207ENST00000463477 USP42Q9H9J4 1324 aaKnown RBP12.44□□□□□ -0.42
PTPRD-207ENST00000463477 ZPR1O75312 459 aa12.44□□□□□ -0.42
PTPRD-207ENST00000463477 SMC5Q8IY18 1101 aa12.44□□□□□ -0.42
PTPRD-207ENST00000463477 NARFQ9UHQ1 456 aa12.44□□□□□ -0.42
PTPRD-207ENST00000463477 A0A087WZG4 1122 aa12.43□□□□□ -0.42
PTPRD-207ENST00000463477 CACNA1FO60840 1977 aa12.43□□□□□ -0.42
PTPRD-207ENST00000463477 COL15A1P39059 1388 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 ITPRIPQ8IWB1 547 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 TMEM57Q8N5G2 664 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 MRPL50Q8N5N7 158 aaKnown RBP12.42□□□□□ -0.42
PTPRD-207ENST00000463477 SRP68Q9UHB9 627 aaKnown RBP12.42□□□□□ -0.42
PTPRD-207ENST00000463477 MMP10P09238 476 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 USPL1Q5W0Q7 1092 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 MBIPQ9NS73 344 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 CD2APQ9Y5K6 639 aa12.42□□□□□ -0.42
PTPRD-207ENST00000463477 ABCC4O15439 1325 aa12.41□□□□□ -0.42
PTPRD-207ENST00000463477 TM4SF1P30408 202 aa12.41□□□□□ -0.42
PTPRD-207ENST00000463477 RTL5Q5HYW3 569 aaPredicted RBP12.41□□□□□ -0.42
PTPRD-207ENST00000463477 NBPF26B4DH59 902 aa12.4□□□□□ -0.42
PTPRD-207ENST00000463477 NBPF10Q6P3W6 841 aaKnown RBP12.4□□□□□ -0.42
PTPRD-207ENST00000463477 NBPF15Q8N660 670 aa12.4□□□□□ -0.42
PTPRD-207ENST00000463477 BCL2L12Q9HB09 334 aa12.4□□□□□ -0.42
PTPRD-207ENST00000463477 LAS1LQ9Y4W2 734 aaKnown RBP12.4□□□□□ -0.42
PTPRD-207ENST00000463477 KDM3BQ7LBC6 1761 aa12.4□□□□□ -0.43
PTPRD-207ENST00000463477 DAXXQ9UER7 740 aaPredicted RBP12.39□□□□□ -0.43
PTPRD-207ENST00000463477 TBC1D2BQ9UPU7 963 aa12.39□□□□□ -0.43
PTPRD-207ENST00000463477 PARP3Q9Y6F1 533 aa12.39□□□□□ -0.43
PTPRD-207ENST00000463477 TWISTNBQ3B726 338 aaPredicted RBP12.38□□□□□ -0.43
PTPRD-207ENST00000463477 API5Q9BZZ5 524 aaKnown RBP12.38□□□□□ -0.43
PTPRD-207ENST00000463477 ZNF330Q9Y3S2 320 aaPredicted RBP12.38□□□□□ -0.43
PTPRD-207ENST00000463477 ERBB4Q15303 1308 aa12.38□□□□□ -0.43
PTPRD-207ENST00000463477 RGL2O15211 777 aa12.38□□□□□ -0.43
PTPRD-207ENST00000463477 PIP4K2AP48426 406 aaPredicted RBP12.38□□□□□ -0.43
PTPRD-207ENST00000463477 NBR1Q14596 966 aa12.38□□□□□ -0.43
PTPRD-207ENST00000463477 CLEC4GQ6UXB4 293 aa12.38□□□□□ -0.43
PTPRD-207ENST00000463477 DZIP3Q86Y13 1208 aaKnown RBP12.38□□□□□ -0.43
PTPRD-207ENST00000463477 KLHL34Q8N239 644 aa12.38□□□□□ -0.43
PTPRD-207ENST00000463477 UPF2Q9HAU5 1272 aaKnown RBP12.38□□□□□ -0.43
PTPRD-207ENST00000463477 DCAF8L1A6NGE4 600 aa12.37□□□□□ -0.43
PTPRD-207ENST00000463477 ZBTB7BO15156 539 aaPredicted RBP12.37□□□□□ -0.43
PTPRD-207ENST00000463477 CAMTA2O94983 1202 aa12.37□□□□□ -0.43
PTPRD-207ENST00000463477 HOXB7P09629 217 aa12.37□□□□□ -0.43
PTPRD-207ENST00000463477 NFIXQ14938 502 aa12.37□□□□□ -0.43
PTPRD-207ENST00000463477 C4AP0C0L4 1744 aa12.37□□□□□ -0.43
PTPRD-207ENST00000463477 N4BP2Q86UW6 1770 aaPredicted RBP12.36□□□□□ -0.43
PTPRD-207ENST00000463477 POLRMTO00411 1230 aaKnown RBP12.36□□□□□ -0.43
PTPRD-207ENST00000463477 EIF2S2P20042 333 aaKnown RBP12.36□□□□□ -0.43
PTPRD-207ENST00000463477 NUCB1Q02818 461 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 DDR1Q08345 913 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 TSPYL6Q8N831 410 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 NLGN2Q8NFZ4 835 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 GCC1Q96CN9 775 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 TBC1D32Q96NH3 1257 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 UTRNP46939 3433 aa12.36□□□□□ -0.43
PTPRD-207ENST00000463477 TGFB2P61812 414 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 PDIA6Q15084 440 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 KRT24Q2M2I5 525 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 C8orf58Q8NAV2 365 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 SEC24BO95487 1268 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 BECN1Q14457 450 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 LRP10Q7Z4F1 713 aa12.35□□□□□ -0.43
PTPRD-207ENST00000463477 ERVV-1B6SEH8 477 aa12.34□□□□□ -0.43
PTPRD-207ENST00000463477 SERPINB2P05120 415 aa12.34□□□□□ -0.43
PTPRD-207ENST00000463477 MYL6BP14649 208 aa12.34□□□□□ -0.43
PTPRD-207ENST00000463477 TBC1D9BQ66K14 1250 aa12.34□□□□□ -0.43
PTPRD-207ENST00000463477 GOLGB1Q14789 3259 aaKnown RBP12.33□□□□□ -0.44
PTPRD-207ENST00000463477 DEKP35659 375 aaKnown RBP12.33□□□□□ -0.44
PTPRD-207ENST00000463477 SETDB2Q96T68 719 aa12.33□□□□□ -0.44
PTPRD-207ENST00000463477 CHMP4AQ9BY43 222 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms