RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 LRFN2Q9ULH4 789 aa7.42□□□□□ -1.22
VPS41-210ENST00000462429 FAM13AO94988 1023 aa7.41□□□□□ -1.22
VPS41-210ENST00000462429 TMCO4Q5TGY1 634 aa7.41□□□□□ -1.22
VPS41-210ENST00000462429 ANKIB1Q9P2G1 1089 aa7.41□□□□□ -1.22
VPS41-210ENST00000462429 GJA3Q9Y6H8 435 aa7.41□□□□□ -1.22
VPS41-210ENST00000462429 SENP3-EIF4A1A0A087X0R7 540 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 SLC35F4A4IF30 521 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 TNFRSF10BO14763 440 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 SNRPBP14678 240 aaKnown RBP7.4□□□□□ -1.22
VPS41-210ENST00000462429 MTMR3Q13615 1198 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 ZIC5Q96T25 663 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 GPAMQ9HCL2 828 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 KLK14Q9P0G3 267 aa7.4□□□□□ -1.22
VPS41-210ENST00000462429 A0A1W2PNR3 127 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 LCE2BO14633 110 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 NPR3P17342 541 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 MPSTP25325 297 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 LBRQ14739 615 aaKnown RBP7.39□□□□□ -1.23
VPS41-210ENST00000462429 EFHC2Q5JST6 749 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 ALKBH2Q6NS38 261 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 RIPOR1Q6ZS17 1223 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 C7orf43Q8WVR3 580 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 IFT43Q96FT9 208 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 SUSD3Q96L08 255 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 CRISPLD1Q9H336 500 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 RUBCNLQ9H714 662 aa7.39□□□□□ -1.23
VPS41-210ENST00000462429 TGFBR3LH3BV60 316 aa7.38□□□□□ -1.23
VPS41-210ENST00000462429 H7C1W4 665 aa7.38□□□□□ -1.23
VPS41-210ENST00000462429 NOM1Q5C9Z4 860 aaKnown RBP7.38□□□□□ -1.23
VPS41-210ENST00000462429 IER5Q5VY09 327 aa7.38□□□□□ -1.23
VPS41-210ENST00000462429 NLRP8Q86W28 1048 aa7.38□□□□□ -1.23
VPS41-210ENST00000462429 CCDC155Q8N6L0 562 aa7.38□□□□□ -1.23
VPS41-210ENST00000462429 CCDC27Q2M243 656 aa7.37□□□□□ -1.23
VPS41-210ENST00000462429 LRRC69Q6ZNQ3 347 aa7.37□□□□□ -1.23
VPS41-210ENST00000462429 CCDC9Q9Y3X0 531 aaKnown RBP7.37□□□□□ -1.23
VPS41-210ENST00000462429 EIF1AXP47813 144 aaKnown RBP7.36□□□□□ -1.23
VPS41-210ENST00000462429 AAMPQ13685 434 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 FIGNL1Q6PIW4 674 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 TREML1Q86YW5 311 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 ETFBKMTQ8IXQ9 262 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 GMCL1Q96IK5 515 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 HSH2DQ96JZ2 352 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 NUCKS1Q9H1E3 243 aaKnown RBP7.36□□□□□ -1.23
VPS41-210ENST00000462429 FAM13BQ9NYF5 915 aa7.36□□□□□ -1.23
VPS41-210ENST00000462429 MICAL2O94851 1124 aa7.35□□□□□ -1.23
VPS41-210ENST00000462429 TRIM22Q8IYM9 498 aa7.35□□□□□ -1.23
VPS41-210ENST00000462429 ZNF280CQ8ND82 737 aa7.35□□□□□ -1.23
VPS41-210ENST00000462429 BCS1LQ9Y276 419 aa7.35□□□□□ -1.23
VPS41-210ENST00000462429 ITGA6P23229 1130 aa7.34□□□□□ -1.23
VPS41-210ENST00000462429 ZAP70P43403 619 aa7.34□□□□□ -1.23
VPS41-210ENST00000462429 ARHGAP4P98171 946 aa7.34□□□□□ -1.23
VPS41-210ENST00000462429 ECM1Q16610 540 aa7.34□□□□□ -1.23
VPS41-210ENST00000462429 SAMD5Q5TGI4 173 aa7.34□□□□□ -1.23
VPS41-210ENST00000462429 BTLAQ7Z6A9 289 aa7.34□□□□□ -1.23
VPS41-210ENST00000462429 ZBTB39O15060 712 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 NDUFB5O43674 189 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 IDH3AP50213 366 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 ARSDP51689 593 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 MFAP1P55081 439 aaKnown RBP7.33□□□□□ -1.24
VPS41-210ENST00000462429 MARSP56192 900 aaKnown RBP7.33□□□□□ -1.24
VPS41-210ENST00000462429 FAM26DQ5JW98 314 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 KLRG1Q96E93 195 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 CEP63Q96MT8 703 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 DCTN4Q9UJW0 460 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 BRPF3Q9ULD4 1205 aa7.33□□□□□ -1.24
VPS41-210ENST00000462429 POTECB2RU33 542 aa7.32□□□□□ -1.24
VPS41-210ENST00000462429 ATXN7O15265 892 aaPredicted RBP7.32□□□□□ -1.24
VPS41-210ENST00000462429 PPFIA3O75145 1194 aa7.32□□□□□ -1.24
VPS41-210ENST00000462429 EPB42P16452 691 aa7.32□□□□□ -1.24
VPS41-210ENST00000462429 PCSK2P16519 638 aa7.32□□□□□ -1.24
VPS41-210ENST00000462429 DBN1Q16643 649 aa7.32□□□□□ -1.24
VPS41-210ENST00000462429 ZCCHC2Q9C0B9 1178 aaKnown RBP7.32□□□□□ -1.24
VPS41-210ENST00000462429 DMGDHQ9UI17 866 aaKnown RBP7.32□□□□□ -1.24
VPS41-210ENST00000462429 PCDHGC4Q9Y5F7 938 aa7.32□□□□□ -1.24
VPS41-210ENST00000462429 FAM157BP0CG42 384 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 MAPK1P28482 360 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 MZF1P28698 734 aaPredicted RBP7.31□□□□□ -1.24
VPS41-210ENST00000462429 USP5P45974 858 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 TYRO3Q06418 890 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 FOXR1Q6PIV2 292 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 ATCAYQ86WG3 371 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 PIK3R5Q8WYR1 880 aa7.31□□□□□ -1.24
VPS41-210ENST00000462429 ZNF837Q96EG3 531 aaPredicted RBP7.31□□□□□ -1.24
VPS41-210ENST00000462429 CDC14CA4D256 554 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 OPLAHO14841 1288 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 FZD6O60353 706 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 RPLP1P05386 114 aaKnown RBP7.3□□□□□ -1.24
VPS41-210ENST00000462429 THBS1P07996 1170 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 INPP5BP32019 993 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 DNM1Q05193 864 aaKnown RBP7.3□□□□□ -1.24
VPS41-210ENST00000462429 ZNF787Q6DD87 383 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 ZSCAN29Q8IWY8 852 aaPredicted RBP7.3□□□□□ -1.24
VPS41-210ENST00000462429 TTC16Q8NEE8 873 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 GPR152Q8TDT2 470 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 EDEM1Q92611 657 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 CITED4Q96RK1 184 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 BRD7Q9NPI1 651 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 CUEDC1Q9NWM3 386 aaPredicted RBP7.3□□□□□ -1.24
VPS41-210ENST00000462429 PHF24Q9UPV7 400 aa7.3□□□□□ -1.24
VPS41-210ENST00000462429 SV2AQ7L0J3 742 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms