RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ARHGAP27Q6ZUM4 889 aa15.82■□□□□ 0.12
USP40-210ENST00000454354 TRIM35Q9UPQ4 493 aa15.82■□□□□ 0.12
USP40-210ENST00000454354 SLX4Q8IY92 1834 aa15.82■□□□□ 0.12
USP40-210ENST00000454354 C2CD5Q86YS7 1000 aa15.81■□□□□ 0.12
USP40-210ENST00000454354 CNBD1Q8NA66 436 aa15.81■□□□□ 0.12
USP40-210ENST00000454354 TNRC6CQ9HCJ0 1690 aaKnown RBP15.81■□□□□ 0.12
USP40-210ENST00000454354 RRP7AQ9Y3A4 280 aaKnown RBP15.81■□□□□ 0.12
USP40-210ENST00000454354 H0YIN7 160 aa15.8■□□□□ 0.12
USP40-210ENST00000454354 PDE6BP35913 854 aa15.8■□□□□ 0.12
USP40-210ENST00000454354 TTLL6Q8N841 843 aa15.8■□□□□ 0.12
USP40-210ENST00000454354 C1QTNF8P60827 252 aa15.79■□□□□ 0.12
USP40-210ENST00000454354 ST5P78524 1137 aa15.79■□□□□ 0.12
USP40-210ENST00000454354 NEUROD2Q15784 382 aa15.79■□□□□ 0.12
USP40-210ENST00000454354 GPBP1L1Q9HC44 474 aaPredicted RBP15.79■□□□□ 0.12
USP40-210ENST00000454354 MAP3K15Q6ZN16 1313 aa15.78■□□□□ 0.12
USP40-210ENST00000454354 ERVV-1B6SEH8 477 aa15.78■□□□□ 0.12
USP40-210ENST00000454354 CHL1O00533 1208 aa15.78■□□□□ 0.12
USP40-210ENST00000454354 NBPF5PQ86XG9 351 aaPredicted RBP15.78■□□□□ 0.12
USP40-210ENST00000454354 IBTKQ9P2D0 1353 aaPredicted RBP15.77■□□□□ 0.12
USP40-210ENST00000454354 HLFQ16534 295 aa15.77■□□□□ 0.12
USP40-210ENST00000454354 LRP10Q7Z4F1 713 aa15.77■□□□□ 0.12
USP40-210ENST00000454354 CCDC24Q8N4L8 307 aa15.77■□□□□ 0.12
USP40-210ENST00000454354 NIP7Q9Y221 180 aaKnown RBP eCLIP15.77■□□□□ 0.12
USP40-210ENST00000454354 RIC1Q4ADV7 1423 aa15.77■□□□□ 0.11
USP40-210ENST00000454354 ZNF316A6NFI3 1004 aaPredicted RBP15.76■□□□□ 0.11
USP40-210ENST00000454354 PDIA6Q15084 440 aa15.76■□□□□ 0.11
USP40-210ENST00000454354 C9orf131Q5VYM1 1079 aa15.76■□□□□ 0.11
USP40-210ENST00000454354 KIF6Q6ZMV9 814 aa15.76■□□□□ 0.11
USP40-210ENST00000454354 TTLL7Q6ZT98 887 aa15.76■□□□□ 0.11
USP40-210ENST00000454354 LAMB2P55268 1798 aa15.75■□□□□ 0.11
USP40-210ENST00000454354 KLRG2A4D1S0 409 aaPredicted RBP15.75■□□□□ 0.11
USP40-210ENST00000454354 NPHP1O15259 732 aa15.75■□□□□ 0.11
USP40-210ENST00000454354 SRGNP10124 158 aa15.75■□□□□ 0.11
USP40-210ENST00000454354 MYL6BP14649 208 aa15.75■□□□□ 0.11
USP40-210ENST00000454354 STYK1Q6J9G0 422 aa15.75■□□□□ 0.11
USP40-210ENST00000454354 TPTE2Q6XPS3 522 aa15.75■□□□□ 0.11
USP40-210ENST00000454354 ZNF526Q8TF50 670 aaPredicted RBP15.75■□□□□ 0.11
USP40-210ENST00000454354 ZC3H4Q9UPT8 1303 aaKnown RBP15.74■□□□□ 0.11
USP40-210ENST00000454354 NGEFQ8N5V2 710 aa15.74■□□□□ 0.11
USP40-210ENST00000454354 ZNF622Q969S3 477 aaKnown RBP eCLIP15.74■□□□□ 0.11
USP40-210ENST00000454354 MASTLQ96GX5 879 aa15.74■□□□□ 0.11
USP40-210ENST00000454354 CFAP44Q96MT7 982 aa15.74■□□□□ 0.11
USP40-210ENST00000454354 HOXB7P09629 217 aa15.73■□□□□ 0.11
USP40-210ENST00000454354 EIF2S2P20042 333 aaKnown RBP15.73■□□□□ 0.11
USP40-210ENST00000454354 RASSF7Q02833 373 aa15.73■□□□□ 0.11
USP40-210ENST00000454354 GIGYF2Q6Y7W6 1299 aaKnown RBP15.73■□□□□ 0.11
USP40-210ENST00000454354 CNKSR1Q969H4 720 aa15.73■□□□□ 0.11
USP40-210ENST00000454354 RNF181Q9P0P0 153 aa15.73■□□□□ 0.11
USP40-210ENST00000454354 UBN2Q6ZU65 1347 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 NFKBIEO00221 500 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 APAF1O14727 1248 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 KIF3CO14782 793 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 ZNF853P0CG23 659 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 PROSER3Q2NL68 480 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 CCDC184Q52MB2 194 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 NYXQ9GZU5 481 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 ZBTB3Q9H5J0 574 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 ABCC12Q96J65 1359 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 CEP350Q5VT06 3117 aa15.72■□□□□ 0.11
USP40-210ENST00000454354 LMNB1P20700 586 aa15.71■□□□□ 0.11
USP40-210ENST00000454354 PRELPP51888 382 aa15.71■□□□□ 0.11
USP40-210ENST00000454354 KRT24Q2M2I5 525 aa15.71■□□□□ 0.11
USP40-210ENST00000454354 PRPF40BQ6NWY9 871 aaKnown RBP15.71■□□□□ 0.11
USP40-210ENST00000454354 ZNF34Q8IZ26 560 aa15.71■□□□□ 0.11
USP40-210ENST00000454354 LAS1LQ9Y4W2 734 aaKnown RBP15.71■□□□□ 0.11
USP40-210ENST00000454354 LTBP3Q9NS15 1303 aa15.7■□□□□ 0.1
USP40-210ENST00000454354 C21orf2O43822 256 aa15.7■□□□□ 0.1
USP40-210ENST00000454354 NPR1P16066 1061 aa15.7■□□□□ 0.1
USP40-210ENST00000454354 DDX21Q9NR30 783 aaKnown RBP eCLIP15.7■□□□□ 0.1
USP40-210ENST00000454354 MBIPQ9NS73 344 aa15.7■□□□□ 0.1
USP40-210ENST00000454354 IFT57Q9NWB7 429 aa15.7■□□□□ 0.1
USP40-210ENST00000454354 DDX60Q8IY21 1712 aaKnown RBP15.69■□□□□ 0.1
USP40-210ENST00000454354 WDR90Q96KV7 1748 aa15.69■□□□□ 0.1
USP40-210ENST00000454354 FAM177BA6PVY3 158 aa15.69■□□□□ 0.1
USP40-210ENST00000454354 ANXA1P04083 346 aa15.69■□□□□ 0.1
USP40-210ENST00000454354 CALD1Q05682 793 aaKnown RBP15.69■□□□□ 0.1
USP40-210ENST00000454354 CRY2Q49AN0 593 aa15.69■□□□□ 0.1
USP40-210ENST00000454354 SOGA3Q5TF21 947 aa15.69■□□□□ 0.1
USP40-210ENST00000454354 NTSR2O95665 410 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 GPTP24298 496 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 GNAI1P63096 354 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 PARP10Q53GL7 1025 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 HDGFL1Q5TGJ6 251 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 C7orf43Q8WVR3 580 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 KDM2BQ8NHM5 1336 aa15.68■□□□□ 0.1
USP40-210ENST00000454354 CACNA1FO60840 1977 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 GTF2E1P29083 439 aaPredicted RBP15.67■□□□□ 0.1
USP40-210ENST00000454354 ERFEQ4G0M1 354 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 SUSD4Q5VX71 490 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 COPS6Q7L5N1 327 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 NUTM1Q86Y26 1132 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 XAGE3Q8WTP9 111 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 NECTIN2Q92692 538 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 NMRK2Q9NPI5 230 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 CHPF2Q9P2E5 772 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 SNED1Q8TER0 1413 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 RNF123Q5XPI4 1314 aa15.67■□□□□ 0.1
USP40-210ENST00000454354 SENP3-EIF4A1A0A087X0R7 540 aa15.66■□□□□ 0.1
USP40-210ENST00000454354 ANP32CO43423 234 aa15.66■□□□□ 0.1
USP40-210ENST00000454354 CCDC27Q2M243 656 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms