RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 CTR9Q6PD62 1173 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 IQCA1Q86XH1 822 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 LARP6Q9BRS8 491 aaKnown RBP8.99□□□□□ -0.97
NEDD9-204ENST00000448183 GOLGA8AA7E2F4 631 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 HLTFQ14527 1009 aaKnown RBP eCLIP8.99□□□□□ -0.972e-7■□□□□ 10.4
NEDD9-204ENST00000448183 IBSPP21815 317 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 DNA2P51530 1060 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 SSRP1Q08945 709 aaKnown RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 MAP3K12Q12852 859 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 NOLC1Q14978 699 aaKnown RBP eCLIP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 ZSCAN29Q8IWY8 852 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC82Q8N4S0 544 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 ZMYND15Q9H091 742 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 RNF41Q9H4P4 317 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 PRDM11Q9NQV5 511 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 KLHL34Q8N239 644 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 TMX3Q96JJ7 454 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 MTIF2P46199 727 aaKnown RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 FLIIQ13045 1269 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 HDAC1Q13547 482 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC102BQ68D86 513 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 GIMAP6Q6P9H5 292 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC12Q8WUD4 166 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 TIGD1Q96MW7 591 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 TMX1Q9H3N1 280 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 ZSCAN16Q9H4T2 348 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 BCCIPQ9P287 314 aaKnown RBP eCLIP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 SUPT6HQ7KZ85 1726 aaKnown RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC194A0A1B0GVG4 234 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 IFIT3O14879 490 aaKnown RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 ZSCAN22P10073 491 aaPredicted RBP8.98□□□□□ -0.97
NEDD9-204ENST00000448183 KANK3Q6NY19 840 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 KCNH5Q8NCM2 988 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 MYD88Q99836 296 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 HMG20BQ9P0W2 317 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 ZKSCAN5Q9Y2L8 839 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 USP16Q9Y5T5 823 aa8.98□□□□□ -0.97
NEDD9-204ENST00000448183 STARD3NLO95772 234 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 TMEM266Q2M3C6 531 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 MKNK2Q9HBH9 465 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 GOPCQ9HD26 462 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 ORC3Q9UBD5 711 aaPredicted RBP8.97□□□□□ -0.97
NEDD9-204ENST00000448183 IARSP41252 1262 aaKnown RBP8.97□□□□□ -0.97
NEDD9-204ENST00000448183 RBM5P52756 815 aaKnown RBP eCLIP8.97□□□□□ -0.971e-19■■■■■ 58.1
NEDD9-204ENST00000448183 FAM200AQ8TCP9 573 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 TAOK3Q9H2K8 898 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 DBF4Q9UBU7 674 aaPredicted RBP8.97□□□□□ -0.97
NEDD9-204ENST00000448183 PYM1Q9BRP8 204 aaKnown RBP8.97□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC141Q6ZP82 1450 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 EHBP1Q8NDI1 1231 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 NEK1Q96PY6 1258 aa8.97□□□□□ -0.97
NEDD9-204ENST00000448183 RANBP6O60518 1105 aaKnown RBP8.96□□□□□ -0.97
NEDD9-204ENST00000448183 NLRP5P59047 1200 aa8.96□□□□□ -0.97
NEDD9-204ENST00000448183 ZSWIM4Q9H7M6 989 aa8.96□□□□□ -0.97
NEDD9-204ENST00000448183 ARFGAP3Q9NP61 516 aa8.96□□□□□ -0.97
NEDD9-204ENST00000448183 IL16Q14005 1332 aa8.96□□□□□ -0.97
NEDD9-204ENST00000448183 SKILP12757 684 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 MATR3P43243 847 aaKnown RBP eCLIP8.96□□□□□ -0.984e-6■□□□□ 8.9
NEDD9-204ENST00000448183 NUCB1Q02818 461 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 IFIT5Q13325 482 aaKnown RBP8.96□□□□□ -0.98
NEDD9-204ENST00000448183 AMOTQ4VCS5 1084 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 CAVIN4Q5BKX8 364 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 CCDC186Q7Z3E2 898 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 PANK2Q9BZ23 570 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 UBA5Q9GZZ9 404 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 SPECC1LQ69YQ0 1117 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.96□□□□□ -0.98
NEDD9-204ENST00000448183 HYPKQ9NX55 129 aa8.96□□□□□ -0.98
NEDD9-204ENST00000448183 POLR3DP05423 398 aaPredicted RBP8.95□□□□□ -0.98
NEDD9-204ENST00000448183 HOOK3Q86VS8 718 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 FAM114A1Q8IWE2 563 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 SNX21Q969T3 373 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 EMILIN1Q9Y6C2 1016 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 TMCO5BA8MYB1 307 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 NEBLO76041 1014 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 AMPD3Q01432 767 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 TNIP1Q15025 636 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 TICAM2Q86XR7 235 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 ZNF830Q96NB3 372 aaPredicted RBP8.95□□□□□ -0.98
NEDD9-204ENST00000448183 N4BP3O15049 544 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 TUBB4AP04350 444 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 ANAPC15P60006 121 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 GIGYF2Q6Y7W6 1299 aaKnown RBP8.95□□□□□ -0.98
NEDD9-204ENST00000448183 MAATS1Q7Z4T9 603 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 CATIPQ7Z7H3 387 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 IPO4Q8TEX9 1081 aaKnown RBP8.95□□□□□ -0.98
NEDD9-204ENST00000448183 ARHGAP45Q92619 1136 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 JADE2Q9NQC1 790 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 TCP11L1Q9NUJ3 509 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 UBASH3AP57075 661 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 HS1BP3Q53T59 392 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 NME9Q86XW9 330 aa8.95□□□□□ -0.98
NEDD9-204ENST00000448183 GRIN2AQ12879 1464 aa8.94□□□□□ -0.98
NEDD9-204ENST00000448183 MPHOSPH10O00566 681 aaKnown RBP8.94□□□□□ -0.98
NEDD9-204ENST00000448183 SDSP20132 328 aa8.94□□□□□ -0.98
NEDD9-204ENST00000448183 UBA7P41226 1012 aa8.94□□□□□ -0.98
NEDD9-204ENST00000448183 ZC3H6P61129 1189 aaKnown RBP8.94□□□□□ -0.98
NEDD9-204ENST00000448183 CKAP4Q07065 602 aaKnown RBP8.94□□□□□ -0.98
NEDD9-204ENST00000448183 CTNNBL1Q8WYA6 563 aaPredicted RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms