RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 POLA2Q14181 598 aa14.86□□□□□ -0.03
COL28A1-203ENST00000435823 BICDL1Q6ZP65 573 aa14.86□□□□□ -0.03
COL28A1-203ENST00000435823 PIP4P2Q8N4L2 257 aa14.86□□□□□ -0.03
COL28A1-203ENST00000435823 SALL2Q9Y467 1007 aaPredicted RBP14.86□□□□□ -0.03
COL28A1-203ENST00000435823 KRT24Q2M2I5 525 aa14.85□□□□□ -0.03
COL28A1-203ENST00000435823 KIF6Q6ZMV9 814 aa14.85□□□□□ -0.03
COL28A1-203ENST00000435823 IL16Q14005 1332 aa14.85□□□□□ -0.03
COL28A1-203ENST00000435823 RGL2O15211 777 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 SERPINB2P05120 415 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 GPR162Q16538 588 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 HDGFL1Q5TGJ6 251 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 DUSP27Q5VZP5 1158 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 TBC1D9BQ66K14 1250 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 CLEC4GQ6UXB4 293 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 PELP1Q8IZL8 1130 aaKnown RBP14.84□□□□□ -0.03
COL28A1-203ENST00000435823 NECTIN2Q92692 538 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 SETDB2Q96T68 719 aa14.84□□□□□ -0.03
COL28A1-203ENST00000435823 KIF13BQ9NQT8 1826 aa14.83□□□□□ -0.04
COL28A1-203ENST00000435823 TGFB2P61812 414 aa14.83□□□□□ -0.04
COL28A1-203ENST00000435823 WDR63Q8IWG1 891 aa14.83□□□□□ -0.04
COL28A1-203ENST00000435823 CHMP4AQ9BY43 222 aa14.83□□□□□ -0.04
COL28A1-203ENST00000435823 CARMIL3Q8ND23 1372 aa14.83□□□□□ -0.04
COL28A1-203ENST00000435823 ERVV-1B6SEH8 477 aa14.82□□□□□ -0.04
COL28A1-203ENST00000435823 NPHP1O15259 732 aa14.82□□□□□ -0.04
COL28A1-203ENST00000435823 MAP3K15Q6ZN16 1313 aa14.82□□□□□ -0.04
COL28A1-203ENST00000435823 AFDNP55196 1824 aaKnown RBP14.81□□□□□ -0.04
COL28A1-203ENST00000435823 PDIA6Q15084 440 aa14.81□□□□□ -0.04
COL28A1-203ENST00000435823 TTLL7Q6ZT98 887 aa14.81□□□□□ -0.04
COL28A1-203ENST00000435823 TSR2Q969E8 191 aaKnown RBP14.81□□□□□ -0.04
COL28A1-203ENST00000435823 DDX21Q9NR30 783 aaKnown RBP eCLIP14.81□□□□□ -0.04
COL28A1-203ENST00000435823 DBF4Q9UBU7 674 aaPredicted RBP14.81□□□□□ -0.04
COL28A1-203ENST00000435823 NRXN2Q9P2S2 1712 aa14.8□□□□□ -0.04
COL28A1-203ENST00000435823 ELL2O00472 640 aaPredicted RBP14.8□□□□□ -0.04
COL28A1-203ENST00000435823 ANXA1P04083 346 aa14.8□□□□□ -0.04
COL28A1-203ENST00000435823 PROSER3Q2NL68 480 aa14.8□□□□□ -0.04
COL28A1-203ENST00000435823 ZBTB3Q9H5J0 574 aa14.8□□□□□ -0.04
COL28A1-203ENST00000435823 CHPF2Q9P2E5 772 aa14.8□□□□□ -0.04
COL28A1-203ENST00000435823 NIP7Q9Y221 180 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL28A1-203ENST00000435823 PXDNLA1KZ92 1463 aa14.8□□□□□ -0.04
COL28A1-203ENST00000435823 HLFQ16534 295 aa14.79□□□□□ -0.04
COL28A1-203ENST00000435823 LRP10Q7Z4F1 713 aa14.79□□□□□ -0.04
COL28A1-203ENST00000435823 MIER1Q8N108 512 aa14.79□□□□□ -0.04
COL28A1-203ENST00000435823 CNBD1Q8NA66 436 aa14.79□□□□□ -0.04
COL28A1-203ENST00000435823 C8orf58Q8NAV2 365 aa14.79□□□□□ -0.04
COL28A1-203ENST00000435823 N4BP2Q86UW6 1770 aaPredicted RBP14.78□□□□□ -0.04
COL28A1-203ENST00000435823 FANCIQ9NVI1 1328 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 A0A0G2JLW4 131 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 GRIN3BO60391 1043 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 DPEP1P16444 411 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 ST5P78524 1137 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 AIMP1Q12904 312 aaKnown RBP14.78□□□□□ -0.04
COL28A1-203ENST00000435823 CCDC30Q5VVM6 783 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 COPS6Q7L5N1 327 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 NBPF5PQ86XG9 351 aaPredicted RBP14.78□□□□□ -0.04
COL28A1-203ENST00000435823 XAGE3Q8WTP9 111 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 MYH16Q9H6N6 1097 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 HYPKQ9NX55 129 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 NUP98P52948 1817 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 KIAA1551Q9HCM1 1747 aa14.78□□□□□ -0.04
COL28A1-203ENST00000435823 GOLGA2Q08379 1002 aa14.77□□□□□ -0.05
COL28A1-203ENST00000435823 TWISTNBQ3B726 338 aaPredicted RBP14.77□□□□□ -0.05
COL28A1-203ENST00000435823 PRR5LQ6MZQ0 368 aa14.77□□□□□ -0.05
COL28A1-203ENST00000435823 TPTE2Q6XPS3 522 aa14.77□□□□□ -0.05
COL28A1-203ENST00000435823 GIGYF2Q6Y7W6 1299 aaKnown RBP14.77□□□□□ -0.05
COL28A1-203ENST00000435823 WWC3Q9ULE0 1092 aa14.77□□□□□ -0.05
COL28A1-203ENST00000435823 ATP10DQ9P241 1426 aa14.76□□□□□ -0.05
COL28A1-203ENST00000435823 YBX3P16989 372 aaKnown RBP eCLIP14.76□□□□□ -0.05
COL28A1-203ENST00000435823 PDE6BP35913 854 aa14.76□□□□□ -0.05
COL28A1-203ENST00000435823 HSP90AB3PQ58FF7 597 aa14.76□□□□□ -0.05
COL28A1-203ENST00000435823 TSPYL6Q8N831 410 aa14.76□□□□□ -0.05
COL28A1-203ENST00000435823 BRIP1Q9BX63 1249 aa14.76□□□□□ -0.05
COL28A1-203ENST00000435823 FAM177BA6PVY3 158 aa14.75□□□□□ -0.05
COL28A1-203ENST00000435823 GTF2E1P29083 439 aaPredicted RBP14.75□□□□□ -0.05
COL28A1-203ENST00000435823 STK31Q9BXU1 1019 aa14.75□□□□□ -0.05
COL28A1-203ENST00000435823 NYXQ9GZU5 481 aa14.75□□□□□ -0.05
COL28A1-203ENST00000435823 PIM2Q9P1W9 311 aa14.75□□□□□ -0.05
COL28A1-203ENST00000435823 PDZRN3Q9UPQ7 1066 aa14.75□□□□□ -0.05
COL28A1-203ENST00000435823 BCS1LQ9Y276 419 aa14.75□□□□□ -0.05
COL28A1-203ENST00000435823 ZNF521Q96K83 1311 aa14.74□□□□□ -0.05
COL28A1-203ENST00000435823 H0YIN7 160 aa14.74□□□□□ -0.05
COL28A1-203ENST00000435823 GPTP24298 496 aa14.74□□□□□ -0.05
COL28A1-203ENST00000435823 CHRNA5P30532 468 aa14.74□□□□□ -0.05
COL28A1-203ENST00000435823 C2CD5Q86YS7 1000 aa14.74□□□□□ -0.05
COL28A1-203ENST00000435823 CCDC24Q8N4L8 307 aa14.74□□□□□ -0.05
COL28A1-203ENST00000435823 KCNA3P22001 575 aa14.73□□□□□ -0.05
COL28A1-203ENST00000435823 EXOSC9Q06265 439 aaKnown RBP14.73□□□□□ -0.05
COL28A1-203ENST00000435823 PARP10Q53GL7 1025 aa14.73□□□□□ -0.05
COL28A1-203ENST00000435823 ANKRD13DQ6ZTN6 518 aa14.73□□□□□ -0.05
COL28A1-203ENST00000435823 ZNF34Q8IZ26 560 aa14.73□□□□□ -0.05
COL28A1-203ENST00000435823 PLBD2Q8NHP8 589 aa14.73□□□□□ -0.05
COL28A1-203ENST00000435823 IBTKQ9P2D0 1353 aaPredicted RBP14.73□□□□□ -0.05
COL28A1-203ENST00000435823 BRCA1P38398 1863 aaKnown RBP14.72□□□□□ -0.05
COL28A1-203ENST00000435823 ANKRD31Q8N7Z5 1873 aa14.72□□□□□ -0.05
COL28A1-203ENST00000435823 DALRD3Q5D0E6 543 aaKnown RBP14.72□□□□□ -0.05
COL28A1-203ENST00000435823 PPP1R42Q7Z4L9 355 aa14.72□□□□□ -0.05
COL28A1-203ENST00000435823 UBN2Q6ZU65 1347 aa14.71□□□□□ -0.05
COL28A1-203ENST00000435823 ANKRD36CQ5JPF3 1778 aa14.71□□□□□ -0.05
COL28A1-203ENST00000435823 CHD4Q14839 1912 aa14.71□□□□□ -0.05
COL28A1-203ENST00000435823 E9PSI1 815 aa14.71□□□□□ -0.05
COL28A1-203ENST00000435823 DDX58O95786 925 aaKnown RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms