RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 KMT5BQ4FZB7 885 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 LYPD8Q6UX82 237 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 TNS4Q8IZW8 715 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 ZNF526Q8TF50 670 aaPredicted RBP3.65□□□□□ -1.83
MCF2-204ENST00000414978 CLP1Q92989 425 aaKnown RBP3.65□□□□□ -1.83
MCF2-204ENST00000414978 RGS17Q9UGC6 210 aaPredicted RBP3.65□□□□□ -1.83
MCF2-204ENST00000414978 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.65□□□□□ -1.83
MCF2-204ENST00000414978 PPME1Q9Y570 386 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 UNC13BO14795 1591 aa3.65□□□□□ -1.83
MCF2-204ENST00000414978 PZPP20742 1482 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 HSPA1LP34931 641 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 ZSCAN29Q8IWY8 852 aaPredicted RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 C1orf216Q8TAB5 229 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 SCG3Q8WXD2 468 aaKnown RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 PIK3R5Q8WYR1 880 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 VTI1AQ96AJ9 217 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 LNPKQ9C0E8 428 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 PCDHB3Q9Y5E6 796 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 RPS6KL1Q9Y6S9 549 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 MAP3K1Q13233 1512 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 SCAPERQ9BY12 1400 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 A6NHS1 94 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 ICMTO60725 284 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 TOM1O60784 492 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 RAPGEF3O95398 923 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 FAM98CQ17RN3 349 aaKnown RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 TMC7Q7Z402 723 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 NKX2-3Q8TAU0 364 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 ARHGAP23Q9P227 1491 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 UBAP1LF5GYI3 381 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 POU3F3P20264 500 aaPredicted RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 BMS1Q14692 1282 aaKnown RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 ZNF394Q53GI3 561 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 SLC43A3Q8NBI5 491 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 ESF1Q9H501 851 aaKnown RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 CXXC1Q9P0U4 656 aaPredicted RBP3.64□□□□□ -1.83
MCF2-204ENST00000414978 PRKAG2Q9UGJ0 569 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 DCTN4Q9UJW0 460 aa3.64□□□□□ -1.83
MCF2-204ENST00000414978 NKTRP30414 1462 aaKnown RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 TLDC2A0PJX2 215 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 C21orf2O43822 256 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 LDHBP07195 334 aaKnown RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 ATP1A2P50993 1020 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 FKBP4Q02790 459 aaKnown RBP eCLIP3.63□□□□□ -1.83
MCF2-204ENST00000414978 TCEAL1Q15170 157 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 NME8Q8N427 588 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 LRCH3Q96II8 777 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 ZSWIM4Q9H7M6 989 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 CHD2O14647 1828 aaKnown RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 MARCH6O60337 910 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 APLP1P51693 650 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 IRX6P78412 446 aaPredicted RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 DNM1Q05193 864 aaKnown RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 QTRT2Q9H974 415 aaKnown RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 PARP2Q9UGN5 583 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 PARP3Q9Y6F1 533 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 GPATCH8Q9UKJ3 1502 aaKnown RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 COL22A1Q8NFW1 1626 aaPredicted RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 RGS20O76081 388 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 POTEJP0CG39 1038 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 PTK2Q05397 1052 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 FAM9AQ8IZU1 332 aaPredicted RBP3.63□□□□□ -1.83
MCF2-204ENST00000414978 FOXJ1Q92949 421 aa3.63□□□□□ -1.83
MCF2-204ENST00000414978 MROH1Q8NDA8 1641 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 CCNYL3P0C7X3 344 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 PSMD2Q13200 908 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 PDE3BQ13370 1112 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 C8orf34Q49A92 452 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 PTCRAQ6ISU1 281 aaPredicted RBP3.62□□□□□ -1.83
MCF2-204ENST00000414978 ZNF746Q6NUN9 644 aaPredicted RBP3.62□□□□□ -1.83
MCF2-204ENST00000414978 TICAM2Q86XR7 235 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 PHTF2Q8N3S3 785 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 MRPL50Q8N5N7 158 aaKnown RBP3.62□□□□□ -1.83
MCF2-204ENST00000414978 NIF3L1Q9GZT8 377 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 TSPAN10Q9H1Z9 355 aaPredicted RBP3.62□□□□□ -1.83
MCF2-204ENST00000414978 CCSER2Q9H7U1 834 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 RABGEF1Q9UJ41 708 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 PTPN23Q9H3S7 1636 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 GOLGA8CPA6NN73 597 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 POTEB2H3BUK9 544 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 POTEEQ6S8J3 1075 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 SLC10A4Q96EP9 437 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 CYLDQ9NQC7 956 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.62□□□□□ -1.83
MCF2-204ENST00000414978 HPS5Q9UPZ3 1129 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 PLEKHH2Q8IVE3 1493 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 ERBB3P21860 1342 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 NCOA3Q9Y6Q9 1424 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 ZBTB7BO15156 539 aaPredicted RBP3.62□□□□□ -1.83
MCF2-204ENST00000414978 PPFIA4O75335 1185 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 TAS1R3Q7RTX0 852 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 JAZF1Q86VZ6 243 aa3.62□□□□□ -1.83
MCF2-204ENST00000414978 ZNF335Q9H4Z2 1342 aaPredicted RBP3.61□□□□□ -1.83
MCF2-204ENST00000414978 NPHP4O75161 1426 aaPredicted RBP3.61□□□□□ -1.83
MCF2-204ENST00000414978 PLEKHD1A6NEE1 506 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 ZBTB39O15060 712 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 NPR3P17342 541 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 PPP4CP60510 307 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 SWI5Q1ZZU3 235 aa3.61□□□□□ -1.83
MCF2-204ENST00000414978 Q3C1V9 767 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms