RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SNRPA1P09661 255 aaKnown RBP19.41■□□□□ 0.7
CCDC40-202ENST00000374876 NUCB1Q02818 461 aa19.41■□□□□ 0.7
CCDC40-202ENST00000374876 KRT24Q2M2I5 525 aa19.41■□□□□ 0.7
CCDC40-202ENST00000374876 ZNF831Q5JPB2 1677 aa19.41■□□□□ 0.7
CCDC40-202ENST00000374876 PHF14O94880 888 aa19.41■□□□□ 0.7
CCDC40-202ENST00000374876 TBC1D32Q96NH3 1257 aa19.41■□□□□ 0.7
CCDC40-202ENST00000374876 INTS5Q6P9B9 1019 aaKnown RBP19.4■□□□□ 0.7
CCDC40-202ENST00000374876 PNPLA7Q6ZV29 1317 aa19.39■□□□□ 0.7
CCDC40-202ENST00000374876 MYH14Q7Z406 1995 aaKnown RBP19.39■□□□□ 0.7
CCDC40-202ENST00000374876 GIGYF1O75420 1035 aaPredicted RBP19.39■□□□□ 0.69
CCDC40-202ENST00000374876 COL5A3P25940 1745 aaPredicted RBP19.39■□□□□ 0.69
CCDC40-202ENST00000374876 STARD3NLO95772 234 aa19.39■□□□□ 0.69
CCDC40-202ENST00000374876 HMGB2P26583 209 aaKnown RBP19.39■□□□□ 0.69
CCDC40-202ENST00000374876 RC3H1Q5TC82 1133 aaKnown RBP19.39■□□□□ 0.69
CCDC40-202ENST00000374876 TEX13AQ9BXU3 409 aaPredicted RBP19.39■□□□□ 0.69
CCDC40-202ENST00000374876 A1BGP04217 495 aa19.38■□□□□ 0.69
CCDC40-202ENST00000374876 PIP4K2AP48426 406 aaPredicted RBP19.38■□□□□ 0.69
CCDC40-202ENST00000374876 CHD1LQ86WJ1 897 aa19.38■□□□□ 0.69
CCDC40-202ENST00000374876 COL23A1Q86Y22 540 aaPredicted RBP19.38■□□□□ 0.69
CCDC40-202ENST00000374876 CNTNAP4Q9C0A0 1308 aa19.38■□□□□ 0.69
CCDC40-202ENST00000374876 GCC1Q96CN9 775 aa19.37■□□□□ 0.69
CCDC40-202ENST00000374876 C1orf115Q9H7X2 142 aa19.37■□□□□ 0.69
CCDC40-202ENST00000374876 CCDC87Q9NVE4 849 aa19.37■□□□□ 0.69
CCDC40-202ENST00000374876 ZBTB1Q9Y2K1 713 aa19.37■□□□□ 0.69
CCDC40-202ENST00000374876 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.37■□□□□ 0.69
CCDC40-202ENST00000374876 NFKBIBQ15653 356 aa19.37■□□□□ 0.69
CCDC40-202ENST00000374876 LNPKQ9C0E8 428 aa19.37■□□□□ 0.69
CCDC40-202ENST00000374876 RTCBQ9Y3I0 505 aaKnown RBP19.37■□□□□ 0.69
CCDC40-202ENST00000374876 TUBGCP6Q96RT7 1819 aa19.36■□□□□ 0.69
CCDC40-202ENST00000374876 RPS6KA4O75676 772 aa19.35■□□□□ 0.69
CCDC40-202ENST00000374876 EIF2S2P20042 333 aaKnown RBP19.35■□□□□ 0.69
CCDC40-202ENST00000374876 CICQ96RK0 1608 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-202ENST00000374876 NECTIN2Q92692 538 aa19.34■□□□□ 0.69
CCDC40-202ENST00000374876 UBR3Q6ZT12 1888 aa19.34■□□□□ 0.69
CCDC40-202ENST00000374876 ZBTB7AO95365 584 aa19.34■□□□□ 0.69
CCDC40-202ENST00000374876 TRAPPC3LQ5T215 181 aa19.34■□□□□ 0.69
CCDC40-202ENST00000374876 ANKRD45Q5TZF3 282 aa19.34■□□□□ 0.69
CCDC40-202ENST00000374876 ARHGEF1Q92888 912 aaKnown RBP19.34■□□□□ 0.69
CCDC40-202ENST00000374876 ZNF330Q9Y3S2 320 aaPredicted RBP19.34■□□□□ 0.69
CCDC40-202ENST00000374876 SSFA2P28290 1259 aa19.33■□□□□ 0.68
CCDC40-202ENST00000374876 MFAP1P55081 439 aaKnown RBP19.33■□□□□ 0.68
CCDC40-202ENST00000374876 NBPF26B4DH59 902 aa19.32■□□□□ 0.68
CCDC40-202ENST00000374876 NBPF10Q6P3W6 841 aaKnown RBP19.32■□□□□ 0.68
CCDC40-202ENST00000374876 NBPF15Q8N660 670 aa19.32■□□□□ 0.68
CCDC40-202ENST00000374876 FLAD1Q8NFF5 587 aa19.32■□□□□ 0.68
CCDC40-202ENST00000374876 C22orf23Q9BZE7 217 aa19.32■□□□□ 0.68
CCDC40-202ENST00000374876 SIRT2Q8IXJ6 389 aa19.31■□□□□ 0.68
CCDC40-202ENST00000374876 ATF5Q9Y2D1 282 aaPredicted RBP19.31■□□□□ 0.68
CCDC40-202ENST00000374876 INTS3Q68E01 1043 aaKnown RBP19.3■□□□□ 0.68
CCDC40-202ENST00000374876 SOS1Q07889 1333 aaPredicted RBP19.3■□□□□ 0.68
CCDC40-202ENST00000374876 SRCAPQ6ZRS2 3230 aa19.3■□□□□ 0.68
CCDC40-202ENST00000374876 PTPRCP08575 1304 aa19.3■□□□□ 0.68
CCDC40-202ENST00000374876 RFC4P35249 363 aa19.29■□□□□ 0.68
CCDC40-202ENST00000374876 EIF5P55010 431 aaKnown RBP19.29■□□□□ 0.68
CCDC40-202ENST00000374876 ARXQ96QS3 562 aa19.29■□□□□ 0.68
CCDC40-202ENST00000374876 CASZ1Q86V15 1759 aa19.29■□□□□ 0.68
CCDC40-202ENST00000374876 MYL6BP14649 208 aa19.29■□□□□ 0.68
CCDC40-202ENST00000374876 MSL1Q68DK7 614 aa19.29■□□□□ 0.68
CCDC40-202ENST00000374876 SRP68Q9UHB9 627 aaKnown RBP19.29■□□□□ 0.68
CCDC40-202ENST00000374876 QSER1Q2KHR3 1735 aa19.29■□□□□ 0.68
CCDC40-202ENST00000374876 ANXA1P04083 346 aa19.28■□□□□ 0.68
CCDC40-202ENST00000374876 IL6STP40189 918 aaPredicted RBP19.28■□□□□ 0.68
CCDC40-202ENST00000374876 BMP2KLQ5H9B9 411 aa19.28■□□□□ 0.68
CCDC40-202ENST00000374876 ADRA2BP18089 450 aa19.27■□□□□ 0.68
CCDC40-202ENST00000374876 TBC1D2BQ9UPU7 963 aa19.27■□□□□ 0.68
CCDC40-202ENST00000374876 COL15A1P39059 1388 aa19.27■□□□□ 0.68
CCDC40-202ENST00000374876 HDGFL1Q5TGJ6 251 aa19.27■□□□□ 0.67
CCDC40-202ENST00000374876 TBC1D2Q9BYX2 928 aa19.27■□□□□ 0.67
CCDC40-202ENST00000374876 SLC4A2P04920 1241 aa19.26■□□□□ 0.67
CCDC40-202ENST00000374876 PDIA6Q15084 440 aa19.26■□□□□ 0.67
CCDC40-202ENST00000374876 PROSER3Q2NL68 480 aa19.26■□□□□ 0.67
CCDC40-202ENST00000374876 SLC16A10Q8TF71 515 aa19.26■□□□□ 0.67
CCDC40-202ENST00000374876 MTFR1LQ9H019 292 aa19.26■□□□□ 0.67
CCDC40-202ENST00000374876 LAMB4A4D0S4 1761 aa19.26■□□□□ 0.67
CCDC40-202ENST00000374876 HOXB7P09629 217 aa19.25■□□□□ 0.67
CCDC40-202ENST00000374876 USPL1Q5W0Q7 1092 aa19.25■□□□□ 0.67
CCDC40-202ENST00000374876 SLKQ9H2G2 1235 aaPredicted RBP19.25■□□□□ 0.67
CCDC40-202ENST00000374876 ZPR1O75312 459 aa19.24■□□□□ 0.67
CCDC40-202ENST00000374876 SPON1Q9HCB6 807 aa19.24■□□□□ 0.67
CCDC40-202ENST00000374876 CHPF2Q9P2E5 772 aa19.24■□□□□ 0.67
CCDC40-202ENST00000374876 FRAT2O75474 233 aaPredicted RBP19.24■□□□□ 0.67
CCDC40-202ENST00000374876 GYS1P13807 737 aa19.24■□□□□ 0.67
CCDC40-202ENST00000374876 USP42Q9H9J4 1324 aaKnown RBP19.23■□□□□ 0.67
CCDC40-202ENST00000374876 DZIP3Q86Y13 1208 aaKnown RBP19.23■□□□□ 0.67
CCDC40-202ENST00000374876 NARFQ9UHQ1 456 aa19.23■□□□□ 0.67
CCDC40-202ENST00000374876 C4AP0C0L4 1744 aa19.22■□□□□ 0.67
CCDC40-202ENST00000374876 A0A087WZG4 1122 aa19.22■□□□□ 0.67
CCDC40-202ENST00000374876 RPAP2Q8IXW5 612 aaPredicted RBP19.22■□□□□ 0.67
CCDC40-202ENST00000374876 ANKRD44Q8N8A2 993 aa19.22■□□□□ 0.67
CCDC40-202ENST00000374876 DCTPP1Q9H773 170 aa19.22■□□□□ 0.67
CCDC40-202ENST00000374876 PTGER2P43116 358 aa19.21■□□□□ 0.67
CCDC40-202ENST00000374876 AIMP1Q12904 312 aaKnown RBP19.21■□□□□ 0.67
CCDC40-202ENST00000374876 TTLL7Q6ZT98 887 aa19.21■□□□□ 0.67
CCDC40-202ENST00000374876 LRP10Q7Z4F1 713 aa19.21■□□□□ 0.67
CCDC40-202ENST00000374876 BCL2L12Q9HB09 334 aa19.21■□□□□ 0.67
CCDC40-202ENST00000374876 DDX21Q9NR30 783 aaKnown RBP eCLIP19.21■□□□□ 0.67
CCDC40-202ENST00000374876 ERBB4Q15303 1308 aa19.21■□□□□ 0.67
CCDC40-202ENST00000374876 ATP10DQ9P241 1426 aa19.2■□□□□ 0.66
CCDC40-202ENST00000374876 STK31Q9BXU1 1019 aa19.2■□□□□ 0.66
CCDC40-202ENST00000374876 ANTXR1Q9H6X2 564 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms