RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 STX6O43752 255 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 CCDC148Q8NFR7 591 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 EVI5LQ96CN4 794 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 GDPD2Q9HCC8 539 aa13.3□□□□□ -0.28
PTPRF-203ENST00000372407 ZNF397Q8NF99 534 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-203ENST00000372407 KLHL10Q6JEL2 608 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 PIBF1Q8WXW3 757 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 HYPKQ9NX55 129 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 GUCY1B3Q02153 619 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 HDAC1Q13547 482 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-203ENST00000372407 ZNF287Q9HBT7 754 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 TFIP11Q9UBB9 837 aaKnown RBP13.29□□□□□ -0.28
PTPRF-203ENST00000372407 MBD5Q9P267 1494 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 CAVIN2O95810 425 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 KIF4BQ2VIQ3 1234 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 ARHGAP45Q92619 1136 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 SPINK5Q9NQ38 1064 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-203ENST00000372407 ABCC1P33527 1531 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 ADCY10Q96PN6 1610 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 ARHGEF5Q12774 1597 aa13.29□□□□□ -0.28
PTPRF-203ENST00000372407 SCAF11Q99590 1463 aaKnown RBP13.29□□□□□ -0.28
PTPRF-203ENST00000372407 MINDY4BA8MYZ0 360 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 ZNF213O14771 459 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 FAM193AP78312 1265 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 MAP3K12Q12852 859 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 IFIT5Q13325 482 aaKnown RBP13.28□□□□□ -0.28
PTPRF-203ENST00000372407 SEPT7Q16181 437 aaKnown RBP13.28□□□□□ -0.28
PTPRF-203ENST00000372407 WWC2Q6AWC2 1192 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 KIF5CO60282 957 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 TNNT1P13805 278 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 USP8P40818 1118 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 CTCFLQ8NI51 663 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-203ENST00000372407 ZNF165P49910 485 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 FSIP1Q8NA03 581 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 PHAXQ9H814 394 aaKnown RBP13.28□□□□□ -0.28
PTPRF-203ENST00000372407 A0A087WZG4 1122 aa13.28□□□□□ -0.28
PTPRF-203ENST00000372407 SPA17Q15506 151 aa13.27□□□□□ -0.28
PTPRF-203ENST00000372407 TTC22Q5TAA0 569 aa13.27□□□□□ -0.28
PTPRF-203ENST00000372407 TAX1BP1Q86VP1 789 aa13.27□□□□□ -0.28
PTPRF-203ENST00000372407 GSDMDP57764 484 aa13.27□□□□□ -0.28
PTPRF-203ENST00000372407 ZRSR2Q15696 482 aaKnown RBP13.27□□□□□ -0.28
PTPRF-203ENST00000372407 IQCA1Q86XH1 822 aa13.27□□□□□ -0.28
PTPRF-203ENST00000372407 ZSCAN29Q8IWY8 852 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-203ENST00000372407 UBE2HP62256 183 aa13.27□□□□□ -0.29
PTPRF-203ENST00000372407 MPRIPQ6WCQ1 1025 aa13.27□□□□□ -0.29
PTPRF-203ENST00000372407 SAMD9LQ8IVG5 1584 aa13.27□□□□□ -0.29
PTPRF-203ENST00000372407 TMEM2Q9UHN6 1383 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 TTC21BQ7Z4L5 1316 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 UVSSAQ2YD98 709 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 RNF41Q9H4P4 317 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-203ENST00000372407 SEPT11Q9NVA2 429 aaKnown RBP13.26□□□□□ -0.29
PTPRF-203ENST00000372407 GJB2P29033 226 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 USP5P45974 858 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 CCDC82Q8N4S0 544 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 USHBP1Q8N6Y0 703 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 CNNM3Q8NE01 707 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 MBIPQ9NS73 344 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 PCDHB15Q9Y5E8 787 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 CAVIN4Q5BKX8 364 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 FKBP15Q5T1M5 1219 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 PPP1R42Q7Z4L9 355 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 ANKRD18AQ8IVF6 992 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 LARP6Q9BRS8 491 aaKnown RBP13.26□□□□□ -0.29
PTPRF-203ENST00000372407 SLC12A7Q9Y666 1083 aa13.26□□□□□ -0.29
PTPRF-203ENST00000372407 GOLGA8BA8MQT2 603 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 ADCY5O95622 1261 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 ZNF76P36508 570 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 MAP9Q49MG5 647 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 C16orf45Q96MC5 204 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-203ENST00000372407 HECW2Q9P2P5 1572 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 ACEP12821 1306 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 PPP1R12BO60237 982 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-203ENST00000372407 RBM5P52756 815 aaKnown RBP eCLIP13.25□□□□□ -0.29
PTPRF-203ENST00000372407 NUCB1Q02818 461 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 MKNK2Q9HBH9 465 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 ERICH4A6NGS2 130 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 IFIT3O14879 490 aaKnown RBP13.25□□□□□ -0.29
PTPRF-203ENST00000372407 CCT2P78371 535 aaKnown RBP13.25□□□□□ -0.29
PTPRF-203ENST00000372407 JAKMIP3Q5VZ66 844 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 ZNF652Q9Y2D9 606 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 HSP90AB3PQ58FF7 597 aa13.25□□□□□ -0.29
PTPRF-203ENST00000372407 TRMT1Q9NXH9 659 aaKnown RBP13.25□□□□□ -0.29
PTPRF-203ENST00000372407 PI4KAP2A4QPH2 592 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 CALRP27797 417 aaKnown RBP13.24□□□□□ -0.29
PTPRF-203ENST00000372407 ENOX2Q16206 610 aaKnown RBP13.24□□□□□ -0.29
PTPRF-203ENST00000372407 PI4KAP1Q8N8J0 262 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 TMOD3Q9NYL9 352 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 HMG20BQ9P0W2 317 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 MAST1Q9Y2H9 1570 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 PREX2Q70Z35 1606 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 DISP3Q9P2K9 1392 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 STX1AQ16623 288 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 PAF1Q8N7H5 531 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 TMX3Q96JJ7 454 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 RAB34Q9BZG1 259 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 SEC63Q9UGP8 760 aaKnown RBP13.24□□□□□ -0.29
PTPRF-203ENST00000372407 USP16Q9Y5T5 823 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 GOLGA8AA7E2F4 631 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 BICDL1Q6ZP65 573 aa13.24□□□□□ -0.29
PTPRF-203ENST00000372407 CACNA2D4Q7Z3S7 1137 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms