RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 TPD52L1Q16890 204 aaPredicted RBP15.11■□□□□ 0.01
RETREG3-201ENST00000309428 SLFNL1Q499Z3 407 aa15.11■□□□□ 0.01
RETREG3-201ENST00000309428 SNRKQ9NRH2 765 aa15.11■□□□□ 0.01
RETREG3-201ENST00000309428 TMEM63CQ9P1W3 806 aa15.11■□□□□ 0.01
RETREG3-201ENST00000309428 CGNQ9P2M7 1197 aaKnown RBP15.11■□□□□ 0.01
RETREG3-201ENST00000309428 CKAP2LQ8IYA6 745 aa15.11■□□□□ 0.01
RETREG3-201ENST00000309428 XAGE3Q8WTP9 111 aa15.11■□□□□ 0.01
RETREG3-201ENST00000309428 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.11■□□□□ 0.01
RETREG3-201ENST00000309428 HMGN5P82970 282 aaKnown RBP15.1■□□□□ 0.01
RETREG3-201ENST00000309428 LRSAM1Q6UWE0 723 aa15.1■□□□□ 0.01
RETREG3-201ENST00000309428 FAM227BQ96M60 508 aa15.1■□□□□ 0.01
RETREG3-201ENST00000309428 TNNT3P45378 269 aaPredicted RBP15.1■□□□□ 0.01
RETREG3-201ENST00000309428 PPP6R1Q9UPN7 881 aa15.1■□□□□ 0.01
RETREG3-201ENST00000309428 TBX22Q9Y458 520 aa15.1■□□□□ 0.01
RETREG3-201ENST00000309428 MAP3K5Q99683 1374 aa15.1■□□□□ 0.01
RETREG3-201ENST00000309428 TOM1L2Q6ZVM7 507 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 TFIP11Q9UBB9 837 aaKnown RBP15.09■□□□□ 0.01
RETREG3-201ENST00000309428 ATP6V1DQ9Y5K8 247 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 KIAA1210Q9ULL0 1709 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 DDX46Q7L014 1031 aaKnown RBP15.09■□□□□ 0.01
RETREG3-201ENST00000309428 FILIP1Q7Z7B0 1213 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 CPSF1Q10570 1443 aaKnown RBP15.09■□□□□ 0.01
RETREG3-201ENST00000309428 H3BQV1 296 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 GADD45BO75293 160 aaPredicted RBP15.09■□□□□ 0.01
RETREG3-201ENST00000309428 IFFO2Q5TF58 517 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 KIF1BPQ96EK5 621 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 GPATCH3Q96I76 525 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 TLR7Q9NYK1 1049 aaKnown RBP15.09■□□□□ 0.01
RETREG3-201ENST00000309428 SBNO1A3KN83 1393 aa15.09■□□□□ 0.01
RETREG3-201ENST00000309428 CCDC129Q6ZRS4 1044 aa15.08■□□□□ 0.01
RETREG3-201ENST00000309428 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.08■□□□□ 0.01
RETREG3-201ENST00000309428 V9GYY5 206 aaPredicted RBP15.08■□□□□ 0.01
RETREG3-201ENST00000309428 TAF7LQ5H9L4 462 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 CHST3Q7LGC8 479 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 RASEFQ8IZ41 740 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 BICC1Q9H694 974 aaKnown RBP15.08■□□□□ 0
RETREG3-201ENST00000309428 LMBRD1Q9NUN5 540 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 CNPY2Q9Y2B0 182 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 ATP7BP35670 1465 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 TMEM131LA2VDJ0 1609 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 EVA1CP58658 441 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 GUCY1B3Q02153 619 aa15.08■□□□□ 0
RETREG3-201ENST00000309428 DYNC1I1O14576 645 aa15.07■□□□□ 0
RETREG3-201ENST00000309428 EIF4A1P60842 406 aaKnown RBP15.07■□□□□ 0
RETREG3-201ENST00000309428 NOLC1Q14978 699 aaKnown RBP eCLIP15.07■□□□□ 0
RETREG3-201ENST00000309428 TTC21AQ8NDW8 1320 aa15.07■□□□□ 0
RETREG3-201ENST00000309428 PREX1Q8TCU6 1659 aa15.07■□□□□ 0
RETREG3-201ENST00000309428 DBF4Q9UBU7 674 aaPredicted RBP15.07■□□□□ 0
RETREG3-201ENST00000309428 NOL7Q9UMY1 257 aaKnown RBP15.07■□□□□ 0
RETREG3-201ENST00000309428 USP16Q9Y5T5 823 aa15.07■□□□□ 0
RETREG3-201ENST00000309428 DDX58O95786 925 aaKnown RBP15.06■□□□□ 0
RETREG3-201ENST00000309428 ZKSCAN1P17029 563 aaPredicted RBP15.06■□□□□ 0
RETREG3-201ENST00000309428 CABP4P57796 275 aa15.06■□□□□ 0
RETREG3-201ENST00000309428 PRDM11Q9NQV5 511 aa15.06■□□□□ 0
RETREG3-201ENST00000309428 WDR33Q9C0J8 1336 aaKnown RBP15.06■□□□□ 0
RETREG3-201ENST00000309428 USP48Q86UV5 1035 aa15.06■□□□□ 0
RETREG3-201ENST00000309428 PTPRUQ92729 1446 aa15.06■□□□□ 0
RETREG3-201ENST00000309428 CFAP74Q9C0B2 1584 aa15.06■□□□□ 0
RETREG3-201ENST00000309428 TATP17735 454 aaPredicted RBP15.06■□□□□ 0
RETREG3-201ENST00000309428 GNL2Q13823 731 aaKnown RBP15.06■□□□□ 0
RETREG3-201ENST00000309428 IP6K1Q92551 441 aa15.06■□□□□ 0
RETREG3-201ENST00000309428 IGSF1Q8N6C5 1336 aa15.05■□□□□ 0
RETREG3-201ENST00000309428 A0A087WZG4 1122 aa15.05■□□□□ 0
RETREG3-201ENST00000309428 NRDCO43847 1150 aa15.05■□□□□ 0
RETREG3-201ENST00000309428 AK2P54819 239 aa15.05■□□□□ 0
RETREG3-201ENST00000309428 FKBP4Q02790 459 aaKnown RBP eCLIP15.05■□□□□ 0
RETREG3-201ENST00000309428 PTH1RQ03431 593 aa15.05■□□□□ 0
RETREG3-201ENST00000309428 AATKQ6ZMQ8 1374 aa15.05■□□□□ 0
RETREG3-201ENST00000309428 GPTP24298 496 aa15.05■□□□□ -0
RETREG3-201ENST00000309428 HOMER1Q86YM7 354 aa15.05■□□□□ -0
RETREG3-201ENST00000309428 SUCLG2Q96I99 432 aa15.05■□□□□ -0
RETREG3-201ENST00000309428 CDK12Q9NYV4 1490 aaPredicted RBP15.05■□□□□ -0
RETREG3-201ENST00000309428 PTCH1Q13635 1447 aa15.05■□□□□ -0
RETREG3-201ENST00000309428 RAB11FIP3O75154 756 aa15.04■□□□□ -0
RETREG3-201ENST00000309428 ADCK5Q3MIX3 580 aa15.04■□□□□ -0
RETREG3-201ENST00000309428 FAM184AQ8NB25 1140 aa15.04■□□□□ -0
RETREG3-201ENST00000309428 GPT2Q8TD30 523 aa15.04■□□□□ -0
RETREG3-201ENST00000309428 ZNF496Q96IT1 587 aaPredicted RBP15.04■□□□□ -0
RETREG3-201ENST00000309428 TRMT1Q9NXH9 659 aaKnown RBP15.04■□□□□ -0
RETREG3-201ENST00000309428 RNMTO43148 476 aaKnown RBP15.04■□□□□ -0
RETREG3-201ENST00000309428 PDRG1Q9NUG6 133 aa15.04■□□□□ -0
RETREG3-201ENST00000309428 SF3A1Q15459 793 aaKnown RBP15.04■□□□□ -0
RETREG3-201ENST00000309428 ZNF594Q96JF6 807 aaPredicted RBP15.04■□□□□ -0
RETREG3-201ENST00000309428 SEC62Q99442 399 aaKnown RBP15.04■□□□□ -0
RETREG3-201ENST00000309428 WASHC4Q2M389 1173 aa15.03■□□□□ -0
RETREG3-201ENST00000309428 CREBRFQ8IUR6 639 aa15.03■□□□□ -0
RETREG3-201ENST00000309428 TOMM22Q9NS69 142 aa15.03■□□□□ -0
RETREG3-201ENST00000309428 HAND2P61296 217 aa15.03■□□□□ -0
RETREG3-201ENST00000309428 FAM177A1Q8N128 213 aaPredicted RBP15.03■□□□□ -0
RETREG3-201ENST00000309428 CCDC112Q8NEF3 446 aa15.02■□□□□ -0
RETREG3-201ENST00000309428 LARGE1O95461 756 aa15.02□□□□□ -0.01
RETREG3-201ENST00000309428 TIMM10P62072 90 aa15.02□□□□□ -0.01
RETREG3-201ENST00000309428 LARP1BQ659C4 914 aaKnown RBP15.02□□□□□ -0.01
RETREG3-201ENST00000309428 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.02□□□□□ -0.01
RETREG3-201ENST00000309428 ADAMTS13Q76LX8 1427 aa15.02□□□□□ -0.01
RETREG3-201ENST00000309428 CCT2P78371 535 aaKnown RBP15.02□□□□□ -0.01
RETREG3-201ENST00000309428 NMIQ13287 307 aaPredicted RBP15.02□□□□□ -0.01
RETREG3-201ENST00000309428 SKIDA1Q1XH10 827 aa15.02□□□□□ -0.01
RETREG3-201ENST00000309428 ECHDC1Q9NTX5 307 aa15.02□□□□□ -0.01
RETREG3-201ENST00000309428 U2AF2P26368 475 aaKnown RBP eCLIP15.01□□□□□ -0.018e-7■■■■□ 26.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms