RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 SPINK5Q9NQ38 1064 aaPredicted RBP10.57□□□□□ -0.72
CHD6-201ENST00000309279 STARD3NLO95772 234 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 HNRNPUQ00839 825 aaKnown RBP eCLIP10.56□□□□□ -0.72
CHD6-201ENST00000309279 GOLGA2Q08379 1002 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 SLC15A2Q16348 729 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 ZNF827Q17R98 1081 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 USP16Q9Y5T5 823 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 QSER1Q2KHR3 1735 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 UBR3Q6ZT12 1888 aa10.56□□□□□ -0.72
CHD6-201ENST00000309279 PRAMEF22A3QJZ6 481 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 HOXB7P09629 217 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 CRKLP46109 303 aaKnown RBP10.55□□□□□ -0.72
CHD6-201ENST00000309279 INTS5Q6P9B9 1019 aaKnown RBP10.55□□□□□ -0.72
CHD6-201ENST00000309279 STK32BQ9NY57 414 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 LAMB4A4D0S4 1761 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 FANCIQ9NVI1 1328 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 TUBGCP6Q96RT7 1819 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 SLFN5Q08AF3 891 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 TRMT2AQ8IZ69 625 aaKnown RBP10.55□□□□□ -0.72
CHD6-201ENST00000309279 TSR2Q969E8 191 aaKnown RBP10.55□□□□□ -0.72
CHD6-201ENST00000309279 MYH16Q9H6N6 1097 aa10.55□□□□□ -0.72
CHD6-201ENST00000309279 SOS1Q07889 1333 aaPredicted RBP10.54□□□□□ -0.72
CHD6-201ENST00000309279 ZBED9Q6R2W3 1325 aa10.54□□□□□ -0.72
CHD6-201ENST00000309279 KRT24Q2M2I5 525 aa10.54□□□□□ -0.72
CHD6-201ENST00000309279 EXOC8Q8IYI6 725 aa10.54□□□□□ -0.72
CHD6-201ENST00000309279 CCDC87Q9NVE4 849 aa10.54□□□□□ -0.72
CHD6-201ENST00000309279 LOC102724159A0A0B4J2E5 919 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 RPS6KA4O75676 772 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 CANXP27824 592 aaKnown RBP10.53□□□□□ -0.72
CHD6-201ENST00000309279 PWP2Q15269 919 aaKnown RBP10.53□□□□□ -0.72
CHD6-201ENST00000309279 DUSP27Q5VZP5 1158 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 AMIGO3Q86WK7 504 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 C8orf58Q8NAV2 365 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 CDCA7LQ96GN5 454 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 AK7Q96M32 723 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 TFCP2L1Q9NZI6 479 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 SRCAPQ6ZRS2 3230 aa10.53□□□□□ -0.72
CHD6-201ENST00000309279 GNPATO15228 680 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 A1BGP04217 495 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 SSFA2P28290 1259 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 FLAD1Q8NFF5 587 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 ZBTB1Q9Y2K1 713 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 RTCBQ9Y3I0 505 aaKnown RBP10.52□□□□□ -0.73
CHD6-201ENST00000309279 ERBB4Q15303 1308 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 PNPLA7Q6ZV29 1317 aa10.52□□□□□ -0.73
CHD6-201ENST00000309279 NBPF26B4DH59 902 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 IL6STP40189 918 aaPredicted RBP10.51□□□□□ -0.73
CHD6-201ENST00000309279 EIF5P55010 431 aaKnown RBP10.51□□□□□ -0.73
CHD6-201ENST00000309279 R3HDM1Q15032 1099 aaKnown RBP10.51□□□□□ -0.73
CHD6-201ENST00000309279 NBPF10Q6P3W6 841 aaKnown RBP10.51□□□□□ -0.73
CHD6-201ENST00000309279 NBPF15Q8N660 670 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 TSPYL6Q8N831 410 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 IL27Q8NEV9 243 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 FBXW7Q969H0 707 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.51□□□□□ -0.73
CHD6-201ENST00000309279 MCCP23508 829 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 IRF5Q13568 498 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 PDIA6Q15084 440 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 TRAPPC3LQ5T215 181 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 COL23A1Q86Y22 540 aaPredicted RBP10.51□□□□□ -0.73
CHD6-201ENST00000309279 CASZ1Q86V15 1759 aa10.51□□□□□ -0.73
CHD6-201ENST00000309279 CACNA1FO60840 1977 aa10.5□□□□□ -0.73
CHD6-201ENST00000309279 ELL2O00472 640 aaPredicted RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 VAMP4O75379 141 aa10.5□□□□□ -0.73
CHD6-201ENST00000309279 EIF2S2P20042 333 aaKnown RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 EXOSC9Q06265 439 aaKnown RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 TWISTNBQ3B726 338 aaPredicted RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 ERICH6BQ5W0A0 696 aa10.5□□□□□ -0.73
CHD6-201ENST00000309279 LRP10Q7Z4F1 713 aa10.5□□□□□ -0.73
CHD6-201ENST00000309279 ARHGEF1Q92888 912 aaKnown RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 DNAJC2Q99543 621 aaKnown RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 PDGFDQ9GZP0 370 aaPredicted RBP10.5□□□□□ -0.73
CHD6-201ENST00000309279 WDR70Q9NW82 654 aa10.5□□□□□ -0.73
CHD6-201ENST00000309279 RIPOR2Q9Y4F9 1068 aa10.5□□□□□ -0.73
CHD6-201ENST00000309279 C4AP0C0L4 1744 aa10.49□□□□□ -0.73
CHD6-201ENST00000309279 PSDA5PKW4 1024 aaPredicted RBP10.49□□□□□ -0.73
CHD6-201ENST00000309279 SLC4A2P04920 1241 aa10.49□□□□□ -0.73
CHD6-201ENST00000309279 HSP90AB4PQ58FF6 505 aa10.49□□□□□ -0.73
CHD6-201ENST00000309279 HDGFL1Q5TGJ6 251 aa10.49□□□□□ -0.73
CHD6-201ENST00000309279 SMIM5Q71RC9 77 aa10.49□□□□□ -0.73
CHD6-201ENST00000309279 SLC16A10Q8TF71 515 aa10.49□□□□□ -0.73
CHD6-201ENST00000309279 COL15A1P39059 1388 aa10.48□□□□□ -0.73
CHD6-201ENST00000309279 PIP4K2AP48426 406 aaPredicted RBP10.48□□□□□ -0.73
CHD6-201ENST00000309279 GPATCH11Q8N954 259 aa10.48□□□□□ -0.73
CHD6-201ENST00000309279 DDX21Q9NR30 783 aaKnown RBP eCLIP10.48□□□□□ -0.73
CHD6-201ENST00000309279 DBF4Q9UBU7 674 aaPredicted RBP10.48□□□□□ -0.73
CHD6-201ENST00000309279 A0A087WZG4 1122 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 PHF14O94880 888 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 CCDC30Q5VVM6 783 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 NARFQ9UHQ1 456 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 COL24A1Q17RW2 1714 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 MYCNP04198 464 aaPredicted RBP10.47□□□□□ -0.73
CHD6-201ENST00000309279 CT47B1P0C2W7 299 aaPredicted RBP10.47□□□□□ -0.73
CHD6-201ENST00000309279 RFC4P35249 363 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 PROSER3Q2NL68 480 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 RETREG2Q8NC44 543 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 GPBP1L1Q9HC44 474 aaPredicted RBP10.47□□□□□ -0.73
CHD6-201ENST00000309279 RNF216Q9NWF9 866 aaPredicted RBP10.47□□□□□ -0.73
CHD6-201ENST00000309279 CHPF2Q9P2E5 772 aa10.47□□□□□ -0.73
CHD6-201ENST00000309279 USP42Q9H9J4 1324 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 383.5 ms