RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 BICC1Q9H694 974 aaKnown RBP29.19■■■□□ 2.26
TRIM54-201ENST00000296098 SSFA2P28290 1259 aa29.18■■■□□ 2.26
TRIM54-201ENST00000296098 COPS6Q7L5N1 327 aa29.18■■■□□ 2.26
TRIM54-201ENST00000296098 KAZALD1Q96I82 304 aa29.18■■■□□ 2.26
TRIM54-201ENST00000296098 PA2G4Q9UQ80 394 aaKnown RBP29.18■■■□□ 2.26
TRIM54-201ENST00000296098 SOS2Q07890 1332 aaPredicted RBP29.18■■■□□ 2.26
TRIM54-201ENST00000296098 GLRX3O76003 335 aaKnown RBP29.18■■■□□ 2.26
TRIM54-201ENST00000296098 PTMSP20962 102 aa29.18■■■□□ 2.26
TRIM54-201ENST00000296098 NEURL1BA8MQ27 555 aa29.17■■■□□ 2.26
TRIM54-201ENST00000296098 METTL22Q9BUU2 404 aaPredicted RBP29.17■■■□□ 2.26
TRIM54-201ENST00000296098 COL5A2P05997 1499 aaPredicted RBP29.17■■■□□ 2.26
TRIM54-201ENST00000296098 NEK4P51957 841 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 IL17RAQ96F46 866 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 CWC22Q9HCG8 908 aaKnown RBP29.16■■■□□ 2.26
TRIM54-201ENST00000296098 PALD1Q9ULE6 856 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 USP16Q9Y5T5 823 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 ARFGEF2Q9Y6D5 1785 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 PCDH11XQ9BZA7 1347 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 PCDH11YQ9BZA8 1340 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 LRP10Q7Z4F1 713 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 GPATCH3Q96I76 525 aa29.16■■■□□ 2.26
TRIM54-201ENST00000296098 AFDNP55196 1824 aaKnown RBP29.16■■■□□ 2.26
TRIM54-201ENST00000296098 MYD88Q99836 296 aa29.15■■■□□ 2.26
TRIM54-201ENST00000296098 IL25Q9H293 177 aa29.15■■■□□ 2.26
TRIM54-201ENST00000296098 NUCB2P80303 420 aa29.15■■■□□ 2.26
TRIM54-201ENST00000296098 CLEC17AQ6ZS10 378 aa29.15■■■□□ 2.26
TRIM54-201ENST00000296098 MCM2P49736 904 aa29.14■■■□□ 2.26
TRIM54-201ENST00000296098 GCKRQ14397 625 aa29.14■■■□□ 2.26
TRIM54-201ENST00000296098 TOM1L2Q6ZVM7 507 aa29.14■■■□□ 2.26
TRIM54-201ENST00000296098 SLAIN2Q9P270 581 aa29.14■■■□□ 2.26
TRIM54-201ENST00000296098 IFIT2P09913 472 aaKnown RBP29.13■■■□□ 2.25
TRIM54-201ENST00000296098 ANKRD13DQ6ZTN6 518 aa29.13■■■□□ 2.25
TRIM54-201ENST00000296098 GZF1Q9H116 711 aaPredicted RBP29.13■■■□□ 2.25
TRIM54-201ENST00000296098 ECHDC1Q9NTX5 307 aa29.13■■■□□ 2.25
TRIM54-201ENST00000296098 SGSM2O43147 1006 aa29.13■■■□□ 2.25
TRIM54-201ENST00000296098 L1TD1Q5T7N2 865 aaKnown RBP29.13■■■□□ 2.25
TRIM54-201ENST00000296098 BRPF3Q9ULD4 1205 aa29.12■■■□□ 2.25
TRIM54-201ENST00000296098 ZNF335Q9H4Z2 1342 aaPredicted RBP29.12■■■□□ 2.25
TRIM54-201ENST00000296098 UBR2Q8IWV8 1755 aa29.12■■■□□ 2.25
TRIM54-201ENST00000296098 G3BP1Q13283 466 aaKnown RBP eCLIP29.11■■■□□ 2.25
TRIM54-201ENST00000296098 RAD50Q92878 1312 aa29.11■■■□□ 2.25
TRIM54-201ENST00000296098 AACSQ86V21 672 aa29.11■■■□□ 2.25
TRIM54-201ENST00000296098 ZCRB1Q8TBF4 217 aaKnown RBP29.11■■■□□ 2.25
TRIM54-201ENST00000296098 HSPA4P34932 840 aa29.1■■■□□ 2.25
TRIM54-201ENST00000296098 PAPPAQ13219 1627 aa29.1■■■□□ 2.25
TRIM54-201ENST00000296098 CYP2E1P05181 493 aaPredicted RBP29.1■■■□□ 2.25
TRIM54-201ENST00000296098 PIP4K2AP48426 406 aaPredicted RBP29.1■■■□□ 2.25
TRIM54-201ENST00000296098 SKOR2Q2VWA4 1001 aaPredicted RBP29.1■■■□□ 2.25
TRIM54-201ENST00000296098 ZGPATQ8N5A5 531 aaKnown RBP29.1■■■□□ 2.25
TRIM54-201ENST00000296098 GOLGA6L22H0YM25 854 aa29.09■■■□□ 2.25
TRIM54-201ENST00000296098 SHANK3Q9BYB0 1731 aa29.09■■■□□ 2.25
TRIM54-201ENST00000296098 TMX3Q96JJ7 454 aa29.08■■■□□ 2.25
TRIM54-201ENST00000296098 SASH1O94885 1247 aa29.08■■■□□ 2.25
TRIM54-201ENST00000296098 BAG4O95429 457 aaKnown RBP29.07■■■□□ 2.24
TRIM54-201ENST00000296098 ERBB4Q15303 1308 aa29.07■■■□□ 2.24
TRIM54-201ENST00000296098 GOLGA6L3A6NEY3 463 aa29.06■■■□□ 2.24
TRIM54-201ENST00000296098 DIAPH3Q9NSV4 1193 aa29.06■■■□□ 2.24
TRIM54-201ENST00000296098 NHSL1Q5SYE7 1610 aa29.06■■■□□ 2.24
TRIM54-201ENST00000296098 IL27Q8NEV9 243 aa29.06■■■□□ 2.24
TRIM54-201ENST00000296098 LSG1Q9H089 658 aaKnown RBP29.06■■■□□ 2.24
TRIM54-201ENST00000296098 COL15A1P39059 1388 aa29.05■■■□□ 2.24
TRIM54-201ENST00000296098 FSD2A1L4K1 749 aa29.05■■■□□ 2.24
TRIM54-201ENST00000296098 ERVV-2B6SEH9 535 aa29.05■■■□□ 2.24
TRIM54-201ENST00000296098 CWC27Q6UX04 472 aaKnown RBP29.05■■■□□ 2.24
TRIM54-201ENST00000296098 IL2RBP14784 551 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 EPHA10Q5JZY3 1008 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 RUFY2Q8WXA3 655 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 CARD10Q9BWT7 1032 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 KCPQ6ZWJ8 1503 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 KIAA1211Q6ZU35 1233 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 PLBD2Q8NHP8 589 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 SIL1Q9H173 461 aa29.04■■■□□ 2.24
TRIM54-201ENST00000296098 EAF2Q96CJ1 260 aaPredicted RBP29.03■■■□□ 2.24
TRIM54-201ENST00000296098 EVI5LQ96CN4 794 aa29.03■■■□□ 2.24
TRIM54-201ENST00000296098 CUL4AQ13619 759 aa29.03■■■□□ 2.24
TRIM54-201ENST00000296098 PKP1Q13835 747 aa29.03■■■□□ 2.24
TRIM54-201ENST00000296098 UPF3BQ9BZI7 483 aaKnown RBP29.03■■■□□ 2.24
TRIM54-201ENST00000296098 NUP188Q5SRE5 1749 aa29.02■■■□□ 2.24
TRIM54-201ENST00000296098 NKX1-1Q15270 411 aaPredicted RBP29.02■■■□□ 2.24
TRIM54-201ENST00000296098 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.02■■■□□ 2.24
TRIM54-201ENST00000296098 KLHDC4Q8TBB5 520 aa29.01■■■□□ 2.23
TRIM54-201ENST00000296098 UBE3BQ7Z3V4 1068 aa29■■■□□ 2.23
TRIM54-201ENST00000296098 KDM4FA0A1W2PPD8 638 aa28.99■■■□□ 2.23
TRIM54-201ENST00000296098 CCDC8Q9H0W5 538 aaPredicted RBP28.99■■■□□ 2.23
TRIM54-201ENST00000296098 SNX14Q9Y5W7 946 aa28.99■■■□□ 2.23
TRIM54-201ENST00000296098 INTS4Q96HW7 963 aaKnown RBP28.99■■■□□ 2.23
TRIM54-201ENST00000296098 COPRSQ9NQ92 184 aa28.99■■■□□ 2.23
TRIM54-201ENST00000296098 ATP5J2-PTCD1G3V325 749 aa28.98■■■□□ 2.23
TRIM54-201ENST00000296098 PTCD1O75127 700 aaKnown RBP28.98■■■□□ 2.23
TRIM54-201ENST00000296098 RABL6Q3YEC7 729 aaPredicted RBP28.98■■■□□ 2.23
TRIM54-201ENST00000296098 NOL8Q76FK4 1167 aaKnown RBP28.98■■■□□ 2.23
TRIM54-201ENST00000296098 STRN4Q9NRL3 753 aa28.98■■■□□ 2.23
TRIM54-201ENST00000296098 TLR7Q9NYK1 1049 aaKnown RBP28.98■■■□□ 2.23
TRIM54-201ENST00000296098 TNS2Q63HR2 1409 aa28.98■■■□□ 2.23
TRIM54-201ENST00000296098 NBPF26B4DH59 902 aa28.98■■■□□ 2.23
TRIM54-201ENST00000296098 NBPF14Q5TI25 921 aa28.98■■■□□ 2.23
TRIM54-201ENST00000296098 NBPF10Q6P3W6 841 aaKnown RBP28.98■■■□□ 2.23
TRIM54-201ENST00000296098 NBPF15Q8N660 670 aa28.98■■■□□ 2.23
TRIM54-201ENST00000296098 A0A087WZG4 1122 aa28.97■■■□□ 2.23
TRIM54-201ENST00000296098 JARID2Q92833 1246 aaPredicted RBP28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms