RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 UNC13BO14795 1591 aa11.46□□□□□ -0.58
COL6A3-201ENST00000295550 SMARCA5O60264 1052 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-201ENST00000295550 CLASP1Q7Z460 1538 aa11.46□□□□□ -0.58
COL6A3-201ENST00000295550 UBE4AQ14139 1066 aa11.45□□□□□ -0.58
COL6A3-201ENST00000295550 ESCO1Q5FWF5 840 aa11.45□□□□□ -0.58
COL6A3-201ENST00000295550 GLRX3O76003 335 aaKnown RBP11.45□□□□□ -0.58
COL6A3-201ENST00000295550 GTF2A1P52655 376 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-201ENST00000295550 RAI14Q9P0K7 980 aa11.45□□□□□ -0.58
COL6A3-201ENST00000295550 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.45□□□□□ -0.58
COL6A3-201ENST00000295550 GCOM1H8Y6P7 765 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-201ENST00000295550 MYZAPP0CAP1 466 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 KIF6Q6ZMV9 814 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 PPM1EQ8WY54 764 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 PIK3R4Q99570 1358 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 XPCQ01831 940 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-201ENST00000295550 C16orf45Q96MC5 204 aaPredicted RBP11.44□□□□□ -0.58
COL6A3-201ENST00000295550 CAMK4Q16566 473 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 ANAPC15P60006 121 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 TTC39AQ5SRH9 613 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 CCDC69A6NI79 296 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 CDC42BPBQ9Y5S2 1711 aa11.44□□□□□ -0.58
COL6A3-201ENST00000295550 BAG4O95429 457 aaKnown RBP11.44□□□□□ -0.58
COL6A3-201ENST00000295550 GIGYF2Q6Y7W6 1299 aaKnown RBP11.43□□□□□ -0.58
COL6A3-201ENST00000295550 SPG7Q9UQ90 795 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 A0A1W2PP64 1363 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 GSTTP1A0A1W2PQM5 241 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 WAPLQ7Z5K2 1190 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 NUTM1Q86Y26 1132 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 SCAND2PQ9GZW5 306 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-201ENST00000295550 SIL1Q9H173 461 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 DNAJC5BQ9UF47 199 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 MYO10Q9HD67 2058 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 UBE2Q2Q8WVN8 375 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 CCDC97Q96F63 343 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-201ENST00000295550 CCDC158Q5M9N0 1113 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 BCCIPQ9P287 314 aaKnown RBP eCLIP11.43□□□□□ -0.58
COL6A3-201ENST00000295550 TATP17735 454 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-201ENST00000295550 NOL7Q9UMY1 257 aaKnown RBP11.43□□□□□ -0.58
COL6A3-201ENST00000295550 IDI1Q13907 227 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 CCDC178Q5BJE1 867 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 CLIP2Q9UDT6 1046 aa11.43□□□□□ -0.58
COL6A3-201ENST00000295550 DYNC1I1O14576 645 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 NEBLO76041 1014 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 TAF7Q15545 349 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-201ENST00000295550 FEZ1Q99689 392 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 SPECC1LQ69YQ0 1117 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 CFAP57Q96MR6 1250 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 MIS18AQ9NYP9 233 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 IL1RAPL2Q9NP60 686 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 LIMCH1Q9UPQ0 1083 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 MYOM2P54296 1465 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 LAMC1P11047 1609 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 LMAN1P49257 510 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 MATR3P43243 847 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL6A3-201ENST00000295550 ZSCAN23Q3MJ62 389 aa11.42□□□□□ -0.58
COL6A3-201ENST00000295550 POTEJP0CG39 1038 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 IRX3P78415 501 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-201ENST00000295550 SMC5Q8IY18 1101 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 ATP2B2Q01814 1243 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 FLIIQ13045 1269 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 VPS36Q86VN1 386 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 DNAAF4Q8WXU2 420 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 PRPF40BQ6NWY9 871 aaKnown RBP11.41□□□□□ -0.58
COL6A3-201ENST00000295550 CTNNA3Q9UI47 895 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 SSBP05455 408 aaKnown RBP eCLIP11.41□□□□□ -0.58
COL6A3-201ENST00000295550 KCNH5Q8NCM2 988 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 SMARCC1Q92922 1105 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-201ENST00000295550 GNL3LQ9NVN8 582 aaKnown RBP11.41□□□□□ -0.58
COL6A3-201ENST00000295550 PPP1R12BO60237 982 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-201ENST00000295550 CETN2P41208 172 aa11.41□□□□□ -0.58
COL6A3-201ENST00000295550 HOOK3Q86VS8 718 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 RIMS2Q9UQ26 1411 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 MRPL50Q8N5N7 158 aaKnown RBP11.4□□□□□ -0.58
COL6A3-201ENST00000295550 SPDYE4A6NLX3 237 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 AMOTQ4VCS5 1084 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 ZCCHC11Q5TAX3 1644 aaKnown RBP11.4□□□□□ -0.58
COL6A3-201ENST00000295550 ZSCAN25Q6NSZ9 544 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 ALS2CR12Q96Q35 445 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 BMP2KQ9NSY1 1161 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-201ENST00000295550 CEP112Q8N8E3 955 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 NACAP1Q9BZK3 213 aa11.4□□□□□ -0.58
COL6A3-201ENST00000295550 RAB3GAP1Q15042 981 aa11.4□□□□□ -0.59
COL6A3-201ENST00000295550 NUP133Q8WUM0 1156 aa11.4□□□□□ -0.59
COL6A3-201ENST00000295550 ZMYND15Q9H091 742 aa11.4□□□□□ -0.59
COL6A3-201ENST00000295550 RLBP1P12271 317 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 XRCC6P12956 609 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL6A3-201ENST00000295550 NPATQ14207 1427 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 YTHDC2Q9H6S0 1430 aaKnown RBP11.39□□□□□ -0.59
COL6A3-201ENST00000295550 TOP1P11387 765 aaKnown RBP11.39□□□□□ -0.59
COL6A3-201ENST00000295550 CLCN1P35523 988 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 MAATS1Q7Z4T9 603 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 C6orf163Q5TEZ5 329 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 ANKRD18BA2A2Z9 1011 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 NUP88Q99567 741 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-201ENST00000295550 HSPA4P34932 840 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 CTNNBL1Q8WYA6 563 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-201ENST00000295550 HYPKQ9NX55 129 aa11.39□□□□□ -0.59
COL6A3-201ENST00000295550 CCDC57Q2TAC2 916 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 KIF4BQ2VIQ3 1234 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms