RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 SCLT1Q96NL6 688 aa8.72□□□□□ -1.01
RIF1-201ENST00000243326 LIMCH1Q9UPQ0 1083 aa8.72□□□□□ -1.01
RIF1-201ENST00000243326 PTPN21Q16825 1174 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 MICU3Q86XE3 530 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 CNNM3Q8NE01 707 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 ZNF219Q9P2Y4 722 aaPredicted RBP8.71□□□□□ -1.01
RIF1-201ENST00000243326 DAPK1P53355 1430 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 C9orf84Q5VXU9 1444 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 HIP1O00291 1037 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 RGS22Q8NE09 1264 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 DACT1Q9NYF0 836 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 ERICH3Q5RHP9 1530 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 CEP57Q86XR8 500 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 DNAAF4Q8WXU2 420 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 UBAC1Q9BSL1 405 aa8.71□□□□□ -1.01
RIF1-201ENST00000243326 DACH1Q9UI36 760 aa8.71□□□□□ -1.02
RIF1-201ENST00000243326 RBM5P52756 815 aaKnown RBP eCLIP8.71□□□□□ -1.022e-8■■■□□ 16.5
RIF1-201ENST00000243326 ZRANB1Q9UGI0 708 aa8.71□□□□□ -1.02
RIF1-201ENST00000243326 PSMD1Q99460 953 aa8.71□□□□□ -1.02
RIF1-201ENST00000243326 ANKRD30BQ9BXX2 1392 aa8.71□□□□□ -1.02
RIF1-201ENST00000243326 RNASE9P60153 205 aaKnown RBP8.71□□□□□ -1.02
RIF1-201ENST00000243326 NUTM2BA6NNL0 878 aaPredicted RBP8.71□□□□□ -1.02
RIF1-201ENST00000243326 NUTM2EB1AL46 878 aaPredicted RBP8.71□□□□□ -1.02
RIF1-201ENST00000243326 TTC22Q5TAA0 569 aa8.71□□□□□ -1.02
RIF1-201ENST00000243326 NUTM2AQ8IVF1 878 aaPredicted RBP8.71□□□□□ -1.02
RIF1-201ENST00000243326 MYO6Q9UM54 1294 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 GAPVD1Q14C86 1478 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 ZSCAN22P10073 491 aaPredicted RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 GPTP24298 496 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 VAT1LQ9HCJ6 419 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 ATAD2Q6PL18 1390 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 IRX3P78415 501 aaPredicted RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 NUCB1Q02818 461 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 IFT81Q8WYA0 676 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 AAMPQ13685 434 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 CCDC57Q2TAC2 916 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 PA2G4Q9UQ80 394 aaKnown RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 ZKSCAN5Q9Y2L8 839 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 TMCO5BA8MYB1 307 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 SLC3A2P08195 630 aaKnown RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 USP8P40818 1118 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 BMS1Q14692 1282 aaKnown RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 SPA17Q15506 151 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 CACNA2D4Q7Z3S7 1137 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 LRP2BPQ9P2M1 347 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 IFIT1P09914 478 aaKnown RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 GBP2P32456 591 aaPredicted RBP8.7□□□□□ -1.02
RIF1-201ENST00000243326 IFNKQ9P0W0 207 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 USP16Q9Y5T5 823 aa8.7□□□□□ -1.02
RIF1-201ENST00000243326 TTC31Q49AM3 519 aaPredicted RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 GOLGA6L7A0A1B0GV03 622 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 MAP3K1Q13233 1512 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 RXRAP19793 462 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 GOLGA8AA7E2F4 631 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 NOP2P46087 812 aaKnown RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 TYRO3Q06418 890 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 IQSEC3Q9UPP2 1182 aaPredicted RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 CAPN2P17655 700 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 DDX46Q7L014 1031 aaKnown RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 CADPSQ9ULU8 1353 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 SSRP1Q08945 709 aaKnown RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 MTIF2P46199 727 aaKnown RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 PAF1Q8N7H5 531 aa8.69□□□□□ -1.02
RIF1-201ENST00000243326 NOL7Q9UMY1 257 aaKnown RBP8.69□□□□□ -1.02
RIF1-201ENST00000243326 GJC1P36383 396 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 ELF2Q15723 593 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 NAIPQ13075 1403 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 RANBP6O60518 1105 aaKnown RBP8.68□□□□□ -1.02
RIF1-201ENST00000243326 SPECC1Q5M775 1068 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 ZNF76P36508 570 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 METTL24Q5JXM2 366 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 TCERG1LQ5VWI1 586 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 ATRIPQ8WXE1 791 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 SLC26A6Q9BXS9 759 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 SUPT6HQ7KZ85 1726 aaKnown RBP8.68□□□□□ -1.02
RIF1-201ENST00000243326 ERCC3P19447 782 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 SOGA3Q5TF21 947 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 GDAP1L1Q96MZ0 367 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 TOM1L2Q6ZVM7 507 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 MRRFQ96E11 262 aaKnown RBP8.68□□□□□ -1.02
RIF1-201ENST00000243326 DMRT2Q9Y5R5 561 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 PPP1R1BQ9UD71 204 aaPredicted RBP8.68□□□□□ -1.02
RIF1-201ENST00000243326 UBE2HP62256 183 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 IMMTQ16891 758 aaKnown RBP8.68□□□□□ -1.02
RIF1-201ENST00000243326 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.68□□□□□ -1.028e-7■■■□□ 17.6
RIF1-201ENST00000243326 ZBTB3Q9H5J0 574 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 UBASH3AP57075 661 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 GUCA1BQ9UMX6 200 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 HYPKQ9NX55 129 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 NCOA1Q15788 1441 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 APOBRQ0VD83 1088 aa8.68□□□□□ -1.02
RIF1-201ENST00000243326 PLEKHO1Q53GL0 409 aaPredicted RBP8.67□□□□□ -1.02
RIF1-201ENST00000243326 PTPN23Q9H3S7 1636 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 OTUD7BQ6GQQ9 843 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 MBIPQ9NS73 344 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 A0A087WWV3 80 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 BRF1Q92994 677 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 AIDAQ96BJ3 306 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 FRMD3A2A2Y4 597 aa8.67□□□□□ -1.02
RIF1-201ENST00000243326 SYT1P21579 422 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms