RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FIGNL2A6NMB9 653 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 BCKDKO14874 412 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 C1QAP02745 245 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 ALOX15P16050 662 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 SERPINB1P30740 379 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 CASQ1P31415 396 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 STX2P32856 288 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 PIK3CGP48736 1102 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 TRPC1P48995 793 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 HNRNPH2P55795 449 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 PLIN5Q00G26 463 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 CBLBQ13191 982 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 CPSF6Q16630 551 aaKnown RBP eCLIP16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 CYP20A1Q6UW02 462 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 B3GNT6Q6ZMB0 384 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 C17orf53Q8N3J3 647 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 GOLM1Q8NBJ4 401 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 TANKQ92844 425 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 TTYH2Q9BSA4 534 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 DMRT3Q9NQL9 472 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 PHF11Q9UIL8 331 aa16.23■□□□□ 0.19
SHKBP1-223ENST00000600552 AKAP9Q99996 3911 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 SYCE1LA8MT33 242 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 PLPP1O14494 284 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 EEDO75530 441 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 GBAP04062 536 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 GLI4P10075 376 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 BUD31P41223 144 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 NEK2P51955 445 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 PHEXP78562 749 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 TNFRSF17Q02223 184 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 SNTB1Q13884 538 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 MPEG1Q2M385 716 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 WLSQ5T9L3 541 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 TMEM64Q6YI46 380 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 RNF111Q6ZNA4 994 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 CYS1Q717R9 158 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC29A4Q7RTT9 530 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 UBTD2Q8WUN7 234 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 UCN3Q969E3 161 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 ART5Q96L15 291 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 RAB17Q9H0T7 212 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 MS4A12Q9NXJ0 267 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 ADGRE2Q9UHX3 823 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 CSMD2Q7Z408 3487 aa16.22■□□□□ 0.19
SHKBP1-223ENST00000600552 FREM3P0C091 2139 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 A0A087X1B8 175 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 TRGV5A0A0B4J1U4 118 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 A0A0G2JNJ9 132 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 OR14I1A6ND48 311 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 FOXO6A8MYZ6 492 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SCELO95171 688 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 C2P06681 752 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 RFPL3SP0C7P2 107 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 PTX3P26022 381 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 MSX1P28360 303 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 ZFP36L2P47974 494 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 IGLV3-21P80748 117 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC7A5Q01650 507 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 CAV1Q03135 178 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 TFF3Q07654 80 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 FOXO1Q12778 655 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 FAM83EQ2M2I3 478 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 ZNF791Q3KP31 576 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 RTL6Q6ICC9 239 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 ZDHHC24Q6UX98 284 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 WDR53Q7Z5U6 358 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 DMRTC2Q8IXT2 367 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 OR10G3Q8NGC4 313 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 NRGNQ92686 78 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 RIT1Q92963 219 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 ATP6V1E2Q96A05 226 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SARAFQ96BY9 339 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SPACA9Q96E40 222 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 VPS11Q9H270 941 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC6A15Q9H2J7 730 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 IPPKQ9H8X2 491 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 SPRR3Q9UBC9 169 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 Q9UFV3 132 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 BOKQ9UMX3 212 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 RNF11Q9Y3C5 154 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 PCDHGA11Q9Y5H2 935 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 FAM215AQ9Y5M1 114 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 NCKAP5O14513 1909 aa16.21■□□□□ 0.19
SHKBP1-223ENST00000600552 MED13LQ71F56 2210 aa16.21■□□□□ 0.18
SHKBP1-223ENST00000600552 ADGRG4Q8IZF6 3080 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 A0A1W2PR48 441 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 ESYT3A0FGR9 886 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 AQP7O14520 342 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 PROM1O43490 865 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 ZWINTO95229 277 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 SIX3O95343 332 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 NADKO95544 446 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 GPR75O95800 540 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 IGHG3P01860 377 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 FAM58BPP0C7Q3 252 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 NR2F6P10588 404 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 MTHFD2P13995 350 aa16.2■□□□□ 0.18
SHKBP1-223ENST00000600552 PIK3CBP42338 1070 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms