RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 MRPL24Q96A35 216 aaKnown RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 RILPQ96NA2 401 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 PKP2Q99959 881 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 TRIM2Q9C040 744 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 PCBD2Q9H0N5 130 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 CCDC177Q9NQR7 707 aaPredicted RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 DDX56Q9NY93 547 aaKnown RBP14.57□□□□□ -0.08
VPS53-218ENST00000575207 HEY2Q9UBP5 337 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 SLC2A6Q9UGQ3 507 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 TENM3Q9P273 2699 aa14.57□□□□□ -0.08
VPS53-218ENST00000575207 H7C0C1 242 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 ABCB7O75027 752 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 SKIV2L2P42285 1042 aaKnown RBP14.56□□□□□ -0.08
VPS53-218ENST00000575207 ATP5OP48047 213 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 ARFIP2P53365 341 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 HILS1P60008 231 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 GGTLC2Q14390 218 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 ALKBH5Q6P6C2 394 aaKnown RBP14.56□□□□□ -0.08
VPS53-218ENST00000575207 P4HA3Q7Z4N8 544 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 TRIM42Q8IWZ5 723 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 ZNF418Q8TF45 676 aaPredicted RBP14.56□□□□□ -0.08
VPS53-218ENST00000575207 CACNG6Q9BXT2 260 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 WWOXQ9NZC7 414 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 WHRNQ9P202 907 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 ANAPC5Q9UJX4 755 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 PROCRQ9UNN8 238 aa14.56□□□□□ -0.08
VPS53-218ENST00000575207 A0A087X0T9 212 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 C17orf105B2RV13 164 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 FAM228BP0C875 321 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 RPS3P23396 243 aaKnown RBP eCLIP14.55□□□□□ -0.08
VPS53-218ENST00000575207 MASP1P48740 699 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 TTPAP49638 278 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 LHX2P50458 406 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 TBPL1P62380 186 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 ACVR1Q04771 509 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 KCNJ11Q14654 390 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 RAB35Q15286 201 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 KLHL38Q2WGJ6 581 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 BICRALQ6AI39 1079 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 TIGD3Q6B0B8 471 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 USP43Q70EL4 1123 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 C17orf64Q86WR6 236 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 LRRC6Q86X45 466 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 C9orf40Q8IXQ3 194 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 ZNF595Q8IYB9 648 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 KBTBD8Q8NFY9 601 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 TMEM41AQ96HV5 264 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 ACTR6Q9GZN1 396 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 COPS7AQ9UBW8 275 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 PLCE1Q9P212 2302 aa14.55□□□□□ -0.08
VPS53-218ENST00000575207 URADA6NGE7 173 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 OR1F1O43749 312 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 GFRA1P56159 465 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 PRAMEP78395 509 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 GUSBP1Q15486 140 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 NFKBIBQ15653 356 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 CYP1B1Q16678 543 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 EXOC3L2Q2M3D2 409 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 AGAP6Q5VW22 663 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 C11orf71Q6IPW1 123 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 APTXQ7Z2E3 356 aaKnown RBP14.54□□□□□ -0.08
VPS53-218ENST00000575207 CLNKQ7Z7G1 428 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 OR4K1Q8NGD4 311 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 RUNDC3BQ96NL0 473 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 TACO1Q9BSH4 297 aaKnown RBP14.54□□□□□ -0.08
VPS53-218ENST00000575207 LRRC40Q9H9A6 602 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 MED29Q9NX70 200 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 CISD1Q9NZ45 108 aaKnown RBP14.54□□□□□ -0.08
VPS53-218ENST00000575207 CHMP5Q9NZZ3 219 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 MARCH4Q9P2E8 410 aaPredicted RBP14.54□□□□□ -0.08
VPS53-218ENST00000575207 ZFP69BQ9UJL9 534 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 RIMKLBQ9ULI2 386 aa14.54□□□□□ -0.08
VPS53-218ENST00000575207 SLC22A20A6NK97 555 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 C4orf51C9J302 202 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 ETHE1O95571 254 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 CDH1P12830 882 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 TNNT1P13805 278 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 ZNF708P17019 499 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 HNF4AP41235 474 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 NR4A2P43354 598 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 STARP49675 285 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 CLDN18P56856 261 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 ZNF844Q08AG5 666 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 RUNX2Q13950 521 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 ACSBG2Q5FVE4 666 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 CTSL3PQ5NE16 218 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 CILP2Q8IUL8 1156 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 SNX31Q8N9S9 440 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 ABHD11Q8NFV4 315 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 HTRA1Q92743 480 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 FAM136AQ96C01 138 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 SOX7Q9BT81 388 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 ALOXE3Q9BYJ1 711 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 METTL17Q9H7H0 456 aaPredicted RBP14.53□□□□□ -0.08
VPS53-218ENST00000575207 CATSPERZQ9NTU4 200 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 AMFRQ9UKV5 643 aa14.53□□□□□ -0.08
VPS53-218ENST00000575207 MRPS33Q9Y291 106 aaKnown RBP14.53□□□□□ -0.08
VPS53-218ENST00000575207 BZW2Q9Y6E2 419 aaKnown RBP14.53□□□□□ -0.08
VPS53-218ENST00000575207 IGHV4-61A0A0C4DH41 118 aa14.52□□□□□ -0.09
VPS53-218ENST00000575207 TRBC2A0A5B9 178 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms