RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SRSF5Q13243 272 aaKnown RBP12.71□□□□□ -0.38
VPS54-203ENST00000409558 SLAMF1Q13291 335 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 TUBA3CQ13748 450 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 LRRC32Q14392 662 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 HEPACAMQ14CZ8 416 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 PDGFRLQ15198 375 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 IRF4Q15306 451 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 TYW3Q6IPR3 259 aaKnown RBP12.71□□□□□ -0.38
VPS54-203ENST00000409558 Q6ZNX1 250 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 GEMIN6Q8WXD5 167 aaKnown RBP12.71□□□□□ -0.38
VPS54-203ENST00000409558 SMARCD2Q92925 531 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 GPN2Q9H9Y4 310 aaPredicted RBP12.71□□□□□ -0.38
VPS54-203ENST00000409558 MALT1Q9UDY8 824 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 MKLN1Q9UL63 735 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 STON1Q9Y6Q2 735 aa12.71□□□□□ -0.38
VPS54-203ENST00000409558 KLHL18O94889 574 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 JUNBP17275 347 aaPredicted RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 ZNF846Q147U1 533 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 FAM46CQ5VWP2 391 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 METTL2BQ6P1Q9 378 aaKnown RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 CASP12Q6UXS9 341 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 RRM2BQ7LG56 351 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 FBXL6Q8N531 539 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 TTTY10Q9BZA0 68 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 HCN4Q9Y3Q4 1203 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 NPIPA5A0A0B4J1W7 369 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 NPIPA7E9PJI5 369 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 FFAR1O14842 300 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 TFECO14948 347 aaPredicted RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 ZW10O43264 779 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 NPIPA8P0DM63 369 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 PPIBP23284 216 aaKnown RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 GGT2P36268 569 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 ATP6V1E1P36543 226 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 SNRPNP63162 240 aaKnown RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 KIAA1324Q6UXG2 1013 aaKnown RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 COMTD1Q86VU5 262 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 PGBD3Q8N328 593 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 ASB16Q96NS5 453 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 ERGIC3Q9Y282 383 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 ATG4BQ9Y4P1 393 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 GSAPA4D1B5 854 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 A8MV72 311 aaPredicted RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 M0R082 166 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 BTN3A3O00478 584 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 KEAP1Q14145 624 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 C10orf62Q5T681 223 aaPredicted RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 LIPKQ5VXJ0 399 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 ZC3H14Q6PJT7 736 aaKnown RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 PATE1Q8WXA2 126 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 DNAJA3Q96EY1 480 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 TREX2Q9BQ50 279 aaPredicted RBP12.7□□□□□ -0.38
VPS54-203ENST00000409558 FNDC11Q9BVV2 318 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 SGPP1Q9BX95 441 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 NUAK2Q9H093 628 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 STARD5Q9NSY2 213 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 CORO2BQ9UQ03 480 aa12.7□□□□□ -0.38
VPS54-203ENST00000409558 CLCA1A8K7I4 914 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 GNB5O14775 395 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ADORA3P0DMS8 318 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 S100A5P33763 92 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 BCAP31P51572 246 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 GABARAPL2P60520 117 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 BTN3A2P78410 334 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 CST6Q15828 149 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 CCNJQ5T5M9 372 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 SMARCD3Q6STE5 483 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 PDZD3Q86UT5 571 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 DNAJC22Q8N4W6 341 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 CAMKK1Q8N5S9 505 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 MYDGFQ969H8 173 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 HRASLS5Q96KN8 279 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ZNF347Q96SE7 839 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 TBX5Q99593 518 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ABCB9Q9NP78 766 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 EFCAB14O75071 495 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 PAPLNO95428 1278 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 TBX6O95947 436 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 PRPH2P23942 346 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ACADLP28330 430 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 CAV3P56539 151 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 CCDC85BQ15834 202 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 IQCCQ4KMZ1 466 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ENPP7Q6UWV6 458 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 PRSS48Q7RTY5 328 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 GPR32P1Q8NGA4 272 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 SMPDL3AQ92484 453 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 C11orf24Q96F05 449 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 RSPO3Q9BXY4 272 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 MRPS30Q9NP92 439 aaKnown RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 SPATA7Q9P0W8 599 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 YARS2Q9Y2Z4 477 aaKnown RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 ENPP4Q9Y6X5 453 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 TANC1Q9C0D5 1861 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 POM121BA6NF01 834 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 ZNF701M0R085 212 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 CAPN5O15484 640 aaPredicted RBP12.69□□□□□ -0.38
VPS54-203ENST00000409558 UGT2B17O75795 530 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 IFNA14P01570 189 aa12.69□□□□□ -0.38
VPS54-203ENST00000409558 HMGN2P05204 90 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms