RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 hCG_1818297A0A087WSY0 165 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1B0GUH1 482 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FAM237BA0A1B0GVD1 139 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TTC24A2A3L6 582 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FAM172BPA6NC97 362 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 LRRC30A6NM36 301 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PCDH17O14917 1159 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 LATO43561 262 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FAM20BO75063 409 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CSTAP01040 98 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF20P17024 532 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 AIMP2Q13155 320 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MFSD13AQ14CX5 517 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 LCN1P1Q5VSP4 162 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 DENND5AQ6IQ26 1287 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FSTL4Q6MZW2 842 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ANKRD26P1Q6NSI1 321 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 BNIPLQ7Z465 357 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 WDR5BQ86VZ2 330 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RPS19BP1Q86WX3 136 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FAM86B1Q8N7N1 296 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 WDSUB1Q8N9V3 476 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PIGXQ8TBF5 258 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PMM1Q92871 262 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MPP4Q96JB8 637 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RPF2Q9H7B2 306 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CYTH4Q9UIA0 394 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 BCORQ6W2J9 1755 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MPDZO75970 2070 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SH3D21A4FU49 640 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ADAM12O43184 909 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SUV39H1O43463 412 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 BCL10O95999 233 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 IL1RNP18510 177 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ACSL1P33121 698 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NR0B1P51843 470 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SLC36A3Q495N2 470 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SLC22A10Q63ZE4 541 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 DRICH1Q6PGQ1 229 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 OR9A4Q8NGU2 314 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 UBXN10Q96LJ8 280 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 DHRS4Q9BTZ2 278 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 KCNF1Q9H3M0 494 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ENY2Q9NPA8 101 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FARSBQ9NSD9 589 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PPP1R14DQ9NXH3 145 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 P2RX2Q9UBL9 471 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CROTQ9UKG9 612 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NAALAD2Q9Y3Q0 740 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 DDX60Q8IY21 1712 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MIA3Q5JRA6 1907 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NAV3Q8IVL0 2385 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FAM208BQ5VWN6 2430 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 IGKV6-21A0A0C4DH24 114 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 A0A1W2PRB8 838 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PVALBP20472 110 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 DNASE1P24855 282 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 GSTM2P28161 218 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 GRK5P34947 590 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 XCR1P46094 333 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SOX4Q06945 474 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SLAMF1Q13291 335 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PMS2P3Q13401 168 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 KCNJ8Q15842 424 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ZSWIM7Q19AV6 140 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 IL23RQ5VWK5 629 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 BNC2Q6ZN30 1099 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF567Q8N184 647 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 C11orf65Q8NCR3 313 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RCBTB1Q8NDN9 531 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TFAP2BQ92481 460 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ZUFSPQ96AP4 578 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PYCR2Q96C36 320 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 GIMAP5Q96F15 307 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 COX4I2Q96KJ9 171 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 KREMEN1Q96MU8 473 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MBOAT7Q96N66 472 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 COMMD4Q9H0A8 199 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MYOM1P52179 1685 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NRXN3Q9Y4C0 1643 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 IGKV6D-21A0A0A0MT36 114 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 VILLO15195 856 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CHRM1P11229 460 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TPSB2P20231 275 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SSTR1P30872 391 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SFTPDP35247 375 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PRKCIP41743 596 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ADPRHP54922 357 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NPRL3Q12980 569 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NOMO1Q15155 1222 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RAB35Q15286 201 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TPSAB1Q15661 275 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RSBN1Q5VWQ0 802 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 OR52E8Q6IFG1 317 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RIPOR1Q6ZS17 1223 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 C19orf35Q6ZS72 473 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PAPD5Q8NDF8 572 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RND1Q92730 232 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 HCSTQ9UBK5 93 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TOGARAM1Q9Y4F4 1720 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms