RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MARK1Q9P0L2 795 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 THAP10Q9P2Z0 257 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TMCC3Q9ULS5 477 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 MAN2B2Q9Y2E5 1009 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM247A6NEH6 219 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LRRC72A6NJI9 287 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CPSF4LA6NMK7 179 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF99A8MXY4 864 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 WWP2O00308 870 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZW10O43264 779 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LDB3O75112 727 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 GASTP01350 101 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CELA2BP08218 269 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CNR2P34972 360 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 BCL6P41182 706 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SLC16A1P53985 500 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 NUP107P57740 925 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 DCDC1P59894 354 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PPP1CAP62136 330 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SELENOWP63302 87 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CSNK1G2P78368 415 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ERV3-1Q14264 604 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 GPR68Q15743 365 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SNAP47Q5SQN1 464 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 FAM71E1Q6IPT2 247 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF793Q6ZN11 406 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 FAM92BQ6ZTR7 304 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 NUDT18Q6ZVK8 323 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 RRM2BQ7LG56 351 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF438Q7Z4V0 828 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 UBE2J2Q8N2K1 259 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 METTL4Q8N3J2 472 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SVOPLQ8N434 492 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 DTX3Q8N9I9 347 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TMIEQ8NEW7 156 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OR8J2Q8NGG1 315 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OR9A2Q8NGT5 310 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OR1E3Q8WZA6 343 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 EZH1Q92800 747 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LRIG1Q96JA1 1093 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ABCB10Q9NRK6 738 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 DNAAF2Q9NVR5 837 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 MS4A12Q9NXJ0 267 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 MSRAQ9UJ68 235 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CYP8B1Q9UNU6 501 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TPRKBQ9Y3C4 175 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PCDHGB3Q9Y5G1 929 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 C4orf51C9J302 202 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 H0YJX3 145 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 KMOO15229 486 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PRMT3O60678 531 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 B4GALT2O60909 372 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 IFNW1P05000 195 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 HMGN2P05204 90 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LAMP2P13473 410 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 HOXA9P31269 272 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 IGFALSP35858 605 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OPRL1P41146 370 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 GP2P55259 537 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 DNASE1L3Q13609 305 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 KIAA1614Q5VZ46 1190 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 XAF1Q6GPH4 301 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ERICH5Q6P6B1 374 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SHQ1Q6PI26 577 aaKnown RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PAQR6Q6TCH4 344 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SERPINA11Q86U17 422 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 NLRP8Q86W28 1048 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 NRSN1Q8IZ57 195 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SLC34A3Q8N130 599 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SYNPOQ8N3V7 929 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 TCEANCQ8N8B7 351 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LEMD2Q8NC56 503 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OR5T3Q8NGG3 340 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 RPLP0P6Q8NHW5 317 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 PSMA8Q8TAA3 256 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 RGMAQ96B86 450 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 CCDC115Q96NT0 180 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF300Q96RE9 604 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-215ENST00000552823 APOOQ9BUR5 198 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SRMSQ9H3Y6 488 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 IL21RQ9HBE5 538 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 EHD3Q9NZN3 535 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 RNF6Q9Y252 685 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 ANGPT4Q9Y264 503 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 SLC27A6Q9Y2P4 619 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 LYVE1Q9Y5Y7 322 aa5.31□□□□□ -1.56
LIMA1-215ENST00000552823 OR6C74A6NCV1 312 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 H0YAE9 185 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 BOLA2-SMG1P6H3BVE0 249 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CAPN5O15484 640 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 RGS5O15539 181 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SDC3O75056 442 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 KRT75O95678 551 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CAPNS1P04632 268 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CEACAM5P06731 702 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 AZGP1P25311 298 aaKnown RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MC3RP41968 323 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TUBA4AP68366 448 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ST3GAL4Q11206 333 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms