RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 IFNW1P05000 195 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 TSPAN19P0C672 248 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 MYL9P24844 172 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 DDOSTP39656 456 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 METAP1P53582 386 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 TBPL1P62380 186 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 HSPB3Q12988 150 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 RFPL4BQ6ZWI9 263 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 PDZD3Q86UT5 571 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 ASZ1Q8WWH4 475 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 C1GALT1C1Q96EU7 318 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 RPRD1BQ9NQG5 326 aaKnown RBP19.96■□□□□ 0.79
CTCF-202ENST00000401394 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 A0A1W2PRB8 838 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 H0YIV9 168 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 EIF2S1P05198 315 aaKnown RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 ALPPL2P10696 532 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 HTR2BP41595 481 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 ANXA8L1Q5VT79 327 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 ACSM5Q6NUN0 579 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 SLCO4C1Q6ZQN7 724 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 CCDC149Q6ZUS6 474 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 YIPF7Q8N8F6 280 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 ZNF461Q8TAF7 563 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 SLC7A13Q8TCU3 470 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 CYB5D2Q8WUJ1 264 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 RC3H2Q9HBD1 1191 aaKnown RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 SOCS5O75159 536 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 OR12D1P0DN82 309 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 ZNF763Q0D2J5 394 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 CCDC85BQ15834 202 aaPredicted RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 VN1R5Q7Z5H4 357 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 OR5D16Q8NGK9 328 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 OR52P1PQ8NH57 321 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 IL20RAQ9UHF4 553 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 PCDHGB2Q9Y5G2 931 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 FRMPD3Q5JV73 1810 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 CCDC182A6NF36 153 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 UGT2B17O75795 530 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 PSKH1P11801 424 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 HOXB6P17509 224 aaKnown RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 XKP51811 444 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 PTPN5P54829 565 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 EFR3AQ14156 821 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 GLYR1Q49A26 553 aaPredicted RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 C22orf39Q6P5X5 142 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 GAREM2Q75VX8 874 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 DEFB128Q7Z7B8 93 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 BMPERQ8N8U9 685 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.95■□□□□ 0.784e-7■■■■■ 32.7
CTCF-202ENST00000401394 TMEM80Q96HE8 168 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 SMAD5Q99717 465 aaKnown RBP19.95■□□□□ 0.78
CTCF-202ENST00000401394 YIPF4Q9BSR8 244 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 FAM83DQ9H4H8 585 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 KCNK12Q9HB15 430 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 RNF186Q9NXI6 227 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 TAAR2Q9P1P5 351 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 MYO10Q9HD67 2058 aa19.95■□□□□ 0.78
CTCF-202ENST00000401394 NUMA1Q14980 2115 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 ANAPC1Q9H1A4 1944 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 RANBP2P49792 3224 aaKnown RBP19.94■□□□□ 0.78
CTCF-202ENST00000401394 A0A075B6Q4 140 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 ZNF670-ZNF695F2Z2N8 137 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 PPM1DO15297 605 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 SH3BP5O60239 455 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 CSTF2P33240 577 aaKnown RBP eCLIP19.94■□□□□ 0.78
CTCF-202ENST00000401394 AP1S2P56377 157 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 MLLT1Q03111 559 aaPredicted RBP19.94■□□□□ 0.78
CTCF-202ENST00000401394 RUNX1T1Q06455 604 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 E2F2Q14209 437 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.94■□□□□ 0.788e-8■■■■□ 25.1
CTCF-202ENST00000401394 Q6ZNB5 142 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 OR7G1Q8NGA0 311 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 CREB3L4Q8TEY5 395 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 KLHL6Q8WZ60 621 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 TMEM159Q96B96 161 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 TMEM19Q96HH6 336 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 NELL2Q99435 816 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 QRSL1Q9H0R6 528 aaKnown RBP19.94■□□□□ 0.78
CTCF-202ENST00000401394 B3GAT2Q9NPZ5 323 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 THSD1Q9NS62 852 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 NLKQ9UBE8 527 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 SHISA3A0PJX4 238 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 NPPBP16860 134 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 ELAVL4P26378 380 aaKnown RBP19.94■□□□□ 0.78
CTCF-202ENST00000401394 GABRR2P28476 465 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 ALDH6A1Q02252 535 aaKnown RBP19.94■□□□□ 0.78
CTCF-202ENST00000401394 RBBP4Q09028 425 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 TMEM25Q86YD3 366 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 FLCNQ8NFG4 579 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 PLA2G12AQ9BZM1 189 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 UCK2Q9BZX2 261 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 POLR2J3Q9H1A7 115 aaKnown RBP19.94■□□□□ 0.78
CTCF-202ENST00000401394 GIMAP4Q9NUV9 329 aa19.94■□□□□ 0.78
CTCF-202ENST00000401394 HMX3A6NHT5 357 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 DPM1O60762 260 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 ITGA2P17301 1181 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 PCBP3P57721 371 aaKnown RBP19.93■□□□□ 0.78
CTCF-202ENST00000401394 TIMM50Q3ZCQ8 353 aa19.93■□□□□ 0.78
CTCF-202ENST00000401394 PDZK1Q5T2W1 519 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms