RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ALG1LQ6GMV1 187 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TYW3Q6IPR3 259 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TRIM69Q86WT6 500 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 PARK7Q99497 189 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 PIP5K1AQ99755 562 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 ADGRE3Q9BY15 652 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 HDHD2Q9H0R4 259 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 WASH6PQ9NQA3 447 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 SCML2Q9UQR0 700 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CKAP5Q14008 2032 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TEX46H3BTG2 121 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 PROM1O43490 865 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TOXO94900 526 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 RAF1P04049 648 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CD22P20273 847 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 LHCGRP22888 699 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 PCGF2P35227 344 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 MVDP53602 400 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 PCDH1Q08174 1060 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 TAF10Q12962 218 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CHIT1Q13231 466 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 SCARB2Q14108 478 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF385BQ569K4 471 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CPTPQ5TA50 214 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 HSDL2Q6YN16 418 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 THEM5Q8N1Q8 247 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 CLDN22Q8N7P3 220 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 BEST4Q8NFU0 473 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 POF1BQ8WVV4 589 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 HERVK_113Q902F9 699 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 MAPKAP1Q9BPZ7 522 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 NLRC5Q86WI3 1866 aa12.82□□□□□ -0.36
CCDC88C-201ENST00000331194 LOC105369274A0A096LPK9 316 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 C2orf92A0A1B0GVN3 265 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 RPS10-NUDT3A0A1W2PQS6 291 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 MYADML2A6NDP7 307 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 PRKYO43930 277 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 SLC43A1O75387 559 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 RECKO95980 971 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 F2P00734 622 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 BPIP17213 487 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 ATF6P18850 670 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 MAPK1P28482 360 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 XCR1P46094 333 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 LIM2P55344 173 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 HBA1P69905 142 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 MLLT11Q13015 90 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 CRHR2Q13324 411 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 GNA13Q14344 377 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 PCBP1Q15365 356 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 CLVS2Q5SYC1 327 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 CHMP1BQ7LBR1 199 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 RBM45Q8IUH3 476 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 OR4N4Q8N0Y3 316 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 OR8J2Q8NGG1 315 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 WFDC6Q9BQY6 131 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 MED28Q9H204 178 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 NCKAP1Q9Y2A7 1128 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 PCDHB1Q9Y5F3 818 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 GOLGA4Q13439 2230 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 ARPC4-TTLL3A0A0A6YYG9 625 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 TRBC2A0A5B9 178 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 TMEM88BA6NKF7 163 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 SLC9A3R1O14745 358 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 LZTS3O60299 673 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 TFPIP10646 304 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 SRP9P49458 86 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 ZNF81P51508 661 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 TEKQ02763 1124 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 CSTF1Q05048 431 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 GPR176Q14439 515 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 TEAD4Q15561 434 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 VRK3Q8IV63 474 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 HJURPQ8NCD3 748 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 PROKR2Q8NFJ6 384 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 OR52I1Q8NGK6 324 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 HUS1BQ8NHY5 278 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 LHFPL5Q8TAF8 219 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 FBXO32Q969P5 355 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 CIDECQ96AQ7 238 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 RSPO3Q9BXY4 272 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 SCPEP1Q9HB40 452 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 BEX1Q9HBH7 125 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 IL26Q9NPH9 171 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 SLCO1C1Q9NYB5 712 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 REV1Q9UBZ9 1251 aa12.81□□□□□ -0.36
CCDC88C-201ENST00000331194 B4GALT3O60512 393 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 HCN1O60741 890 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 SEMA7AO75326 666 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 CLDN7O95471 211 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 LGI1O95970 557 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 FCER2P06734 321 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 HOXD4P09016 255 aaPredicted RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 AOAHP28039 575 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 LIMS1P48059 325 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 CLCNKAP51800 687 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 MC1RQ01726 317 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 RPL6Q02878 288 aaKnown RBP12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 LRRC74AQ0VAA2 488 aa12.8□□□□□ -0.36
CCDC88C-201ENST00000331194 C1DQ13901 141 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms