RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SEMA7AO75326 666 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 KLHL18O94889 574 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CDRT1O95170 752 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 SNX4O95219 450 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 EFEMP2O95967 443 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CYP17A1P05093 508 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 HBQ1P09105 142 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TIMP2P16035 220 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 RUNX1T1Q06455 604 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 FCHO2Q0JRZ9 810 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CRB2Q5IJ48 1285 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TMIGD1Q6UXZ0 262 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CPXM2Q8N436 756 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CD99L2Q8TCZ2 262 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 KLHL6Q8WZ60 621 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 YME1L1Q96TA2 773 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 UCK2Q9BZX2 261 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TMEM38AQ9H6F2 299 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 MOV10Q9HCE1 1003 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 SPATA7Q9P0W8 599 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 PRKAB1Q9Y478 270 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TLX2O43763 284 aaPredicted RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 CSO75390 466 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 C1orf105O95561 183 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 PTGER1P34995 402 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 HMGA2P52926 109 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 SLAMF1Q13291 335 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 FAM71E1Q6IPT2 247 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 ZNF517Q6ZMY9 492 aaPredicted RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 RASGRP3Q8IV61 690 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TRIM48Q8IWZ4 208 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 HORMAD2Q8N7B1 307 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 SLC38A5Q8WUX1 472 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TTYH2Q9BSA4 534 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 POLR2J3Q9H1A7 115 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 RC3H2Q9HBD1 1191 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 SRRDQ9UH36 339 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 YARS2Q9Y2Z4 477 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 CKAP5Q14008 2032 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TRAV19A0A0A6YYK7 116 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 A0A1W2PQ09 198 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 AP2A2O94973 939 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 SEMA3DO95025 777 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 CYP2A6P11509 494 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 SSTR4P31391 388 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 LIMS1P48059 325 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 RFX2P48378 723 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 PCBP3P57721 371 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 HSPB3Q12988 150 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TARDBPQ13148 414 aaKnown RBP eCLIP8.81□□□□□ -1
LIMCH1-215ENST00000512632 PIN1Q13526 163 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 DCST1Q5T197 706 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 HIST2H2AA3Q6FI13 130 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 REEP3Q6NUK4 255 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TCTN3Q6NUS6 607 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZNF544Q6NX49 715 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 CASP12Q6UXS9 341 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 LAS2Q8IYD9 372 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 UBQLNLQ8IYU4 475 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 GPR32P1Q8NGA4 272 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 GOT1L1Q8NHS2 421 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 ASB15Q8WXK1 588 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TMEM19Q96HH6 336 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 RMI1Q9H9A7 625 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 HCFC1R1Q9NWW0 138 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 CNOT2Q9NZN8 540 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 MAPRE3Q9UPY8 281 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 A0A0G2JN53 185 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 SH3D21A4FU49 640 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 CENPXA8MT69 81 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 INHAP05111 366 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 IL7P13232 177 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 OPRD1P41143 372 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 XKP51811 444 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 MANFP55145 182 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 TAP2Q03519 686 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZNF91Q05481 1191 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZFP69Q49AA0 526 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 HENMT1Q5T8I9 393 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 TMEM215Q68D42 235 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 NLRP8Q86W28 1048 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TRAM1L1Q8N609 369 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 METTL2AQ96IZ6 378 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 ZNF558Q96NG5 402 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 PHOX2BQ99453 314 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TAPBPLQ9BX59 468 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 OR2AG1Q9H205 316 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 ABCB9Q9NP78 766 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 SLAMF7Q9NQ25 335 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 PLSCR3Q9NRY6 295 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TAAR2Q9P1P5 351 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 CARD8Q9Y2G2 431 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 KLHL20Q9Y2M5 609 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 KPNA3O00505 521 aaPredicted RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 EIF2S1P05198 315 aaKnown RBP8.81□□□□□ -1
LIMCH1-215ENST00000512632 OSMP13725 252 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 TBRG1Q3YBR2 411 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 SPDYE7PQ495Y7 208 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 C19orf48Q6RUI8 117 aa8.81□□□□□ -1
LIMCH1-215ENST00000512632 FAM131AQ6UXB0 335 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms