RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 BTF3P20290 206 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 MMP8P22894 467 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TM4SF4P48230 202 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RBP2P50120 134 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PTTG1IPP53801 180 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 MLLT10P55197 1068 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ST8SIA6P61647 398 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CSNK2A1P68400 391 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 SNTB1Q13884 538 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 CCINQ13939 588 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SLC9A3R2Q15599 337 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 GPR19Q15760 415 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FAM214AQ32MH5 1076 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 DCAF4L1Q3SXM0 396 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CLLU1Q5K131 121 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CLEC12AQ5QGZ9 265 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PHYHD1Q5SRE7 291 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CTRB2Q6GPI1 263 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 VN1R5Q7Z5H4 357 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 DSG4Q86SJ6 1040 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 GPR149Q86SP6 731 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ALYREFQ86V81 257 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 KIAA0319LQ8IZA0 1049 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 MINDY1Q8N5J2 469 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FAM98AQ8NCA5 519 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 TSEN2Q8NCE0 465 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 B3GALNT2Q8NCR0 500 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CSNK2A3Q8NEV1 391 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TTLQ8NG68 377 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 OR5B17Q8NGF7 314 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 OR1J2Q8NGS2 313 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 OR2A12Q8NGT7 310 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 NFKBIDQ8NI38 313 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LHFPL5Q8TAF8 219 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FCRL4Q96PJ5 515 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 INTS14Q96SY0 518 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PCDHB18PQ96TA0 734 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TRAF4Q9BUZ4 470 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 CACNG6Q9BXT2 260 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SEMA4CQ9C0C4 833 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PITHD1Q9GZP4 211 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 RHOJQ9H4E5 214 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 BARHL2Q9NY43 387 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 KCNG2Q9UJ96 466 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PITPNC1Q9UKF7 332 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FBXO4Q9UKT5 387 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 AGO2Q9UKV8 859 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 INTS6Q9UL03 887 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 TFR2Q9UP52 801 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TEX13DA0A0J9YY54 714 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 A0A1W2PPK0 400 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 F6UZH7 168 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 HSBP1O75506 76 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 EPOP01588 193 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RAB40ALP0C0E4 278 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CT45A8P0DMV1 189 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CT45A9P0DMV2 189 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CKMT2P17540 419 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TFEBP19484 476 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 GCAP28676 217 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 L1CAMP32004 1257 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PCP4P48539 62 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 KHKP50053 298 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF266Q14584 549 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 POU6F1Q14863 301 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 GRIK4Q16099 956 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 UGT8Q16880 541 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 HYAL4Q2M3T9 481 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SLC39A12Q504Y0 691 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CT45A2Q5DJT8 189 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 MLIPQ5VWP3 458 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PRR27Q6MZM9 219 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 FAM180BQ6P0A1 224 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 INTS5Q6P9B9 1019 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 TBPL2Q6SJ96 375 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF620Q6ZNG0 422 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CFAP77Q6ZQR2 320 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 TMEM179Q6ZVK1 233 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF551Q7Z340 670 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 ADGRG3Q86Y34 549 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZFPM1Q8IX07 1006 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 NXPE1Q8N323 547 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 SLC43A2Q8N370 569 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 PCDH20Q8N6Y1 951 aaKnown RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 CMASQ8NFW8 434 aaPredicted RBP3.45□□□□□ -1.86
USP53-205ENST00000509769 RHOXF1Q8NHV9 184 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 DENND1AQ8TEH3 1009 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RAB40AQ8WXH6 277 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LPAR1Q92633 364 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 DPF2Q92785 391 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 OSTF1Q92882 214 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 RAB37Q96AX2 223 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 LGALS12Q96DT0 336 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CSPG4P5Q96PW8 444 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 CRAMP1Q96RY5 1269 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 DMRTA2Q96SC8 542 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 KXD1Q9BQD3 176 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ZNF559Q9BR84 538 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 HERPUD2Q9BSE4 406 aa3.45□□□□□ -1.86
USP53-205ENST00000509769 ISCA1Q9BUE6 129 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms