RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 A8MU76 341 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 TMCC2O75069 709 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 STSP08842 583 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 VSX2P58304 361 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 PCDH1Q08174 1060 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SUZ12Q15022 739 aaKnown RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SLC36A3Q495N2 470 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 LILRA6Q6PI73 481 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 PDZD3Q86UT5 571 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 UCK2Q9BZX2 261 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 BHLHE41Q9C0J9 482 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 ZNF385DQ9H6B1 395 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SNTG1Q9NSN8 517 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SLC25A37Q9NYZ2 338 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 GDE1Q9NZC3 331 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 CLDN25C9JDP6 229 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 TBX1O43435 398 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 GPR37L1O60883 481 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SNX4O95219 450 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 NPPBP16860 134 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 ST3GAL4Q11206 333 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 PIN1Q13526 163 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 C9orf50Q5SZB4 431 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 FAM109BQ6ICB4 259 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 MMP21Q8N119 569 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 VN1R2Q8NFZ6 395 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 PIGXQ8TBF5 258 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 RLN3Q8WXF3 142 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 DNAJA3Q96EY1 480 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 LHPPQ9H008 270 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 KLHL42Q9P2K6 505 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 BRWD1Q9NSI6 2320 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 J3KTA2 159 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 PRKRAO75569 313 aaKnown RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SLCO2B1O94956 709 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 CSNK2BP67870 215 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 LSAMPQ13449 338 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 NHSL2Q5HYW2 709 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SLC35F1Q5T1Q4 408 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 ZNF57Q68EA5 555 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 L3MBTL4Q8NA19 623 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 C19orf18Q8NEA5 215 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 TMIEQ8NEW7 156 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 OR52N2Q8NGI0 321 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 WDR92Q96MX6 357 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 DCSTAMPQ9H295 470 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 GORASP2Q9H8Y8 452 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 BRCA1P38398 1863 aaKnown RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 NINQ8N4C6 2090 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 M0R3H8 397 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 UGDHO60701 494 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 ACPPP15309 386 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 CERS1P27544 350 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 SHHQ15465 462 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 RAB30Q15771 203 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 OR4C11Q6IEV9 310 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 UNC5DQ6UXZ4 953 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 GPR149Q86SP6 731 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 FAM98AQ8NCA5 519 aaKnown RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 UBASH3BQ8TF42 649 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 FAR1Q8WVX9 515 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 INSM2Q96T92 566 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 TRNAU1APQ9NX07 287 aaKnown RBP12.62□□□□□ -0.39
HMGN1-216ENST00000486741 DKK3Q9UBP4 350 aa12.62□□□□□ -0.39
HMGN1-216ENST00000486741 TAF4O00268 1085 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 CASKO14936 926 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 KLK8O60259 260 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 SCN2BO60939 215 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 HLA-DQA2P01906 255 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 YBX1P67809 324 aaKnown RBP12.61□□□□□ -0.39
HMGN1-216ENST00000486741 KCNC4Q03721 635 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 COLEC12Q5KU26 742 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 COX20Q5RI15 118 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 NEK10Q6ZWH5 1172 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 SFTPA1Q8IWL2 248 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 GPR135Q8IZ08 494 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 PHF21AQ96BD5 680 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 ASB16Q96NS5 453 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 MBNL1Q9NR56 388 aaKnown RBP12.61□□□□□ -0.39
HMGN1-216ENST00000486741 WDR45Q9Y484 360 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 FAM170BA6NMN3 283 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 LOC110117498-PIK3R3F6TDL0 507 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 MAGEA10P43363 369 aaPredicted RBP12.61□□□□□ -0.39
HMGN1-216ENST00000486741 NKX3-2P78367 333 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 HOXC5Q00444 222 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 FADDQ13158 208 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 TAB1Q15750 504 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 TSTQ16762 297 aaKnown RBP12.61□□□□□ -0.39
HMGN1-216ENST00000486741 C6orf183Q5T699 404 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 CDC73Q6P1J9 531 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 HSDL2Q6YN16 418 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 MFSD2AQ8NA29 543 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 OR52E1Q8NGJ3 308 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 TESCQ96BS2 214 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 LYSMD1Q96S90 227 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 FUNDC2Q9BWH2 189 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 TMEM27Q9HBJ8 222 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 KNTC1P50748 2209 aa12.61□□□□□ -0.39
HMGN1-216ENST00000486741 ETHE1O95571 254 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms