RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CRELD1Q96HD1 420 aa19.99■□□□□ 0.79
CTCF-202ENST00000401394 TSSK6Q9BXA6 273 aa19.99■□□□□ 0.79
CTCF-202ENST00000401394 SLC6A16Q9GZN6 736 aa19.99■□□□□ 0.79
CTCF-202ENST00000401394 CXorf36Q9H7Y0 433 aa19.99■□□□□ 0.79
CTCF-202ENST00000401394 COMMD3Q9UBI1 195 aa19.99■□□□□ 0.79
CTCF-202ENST00000401394 A0A1B0GVC2 190 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 A6NIN4 97 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 B4DXG7 233 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 ARHGEF15O94989 841 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 IL3P08700 152 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 CHRNB1P11230 501 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 CA8P35219 290 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 SLBPQ14493 270 aaKnown RBP eCLIP19.98■□□□□ 0.79
CTCF-202ENST00000401394 SMUG1Q53HV7 270 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 ATAT1Q5SQI0 421 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 LYPLAL1Q5VWZ2 237 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 SLC8B1Q6J4K2 584 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 TECPR1Q7Z6L1 1165 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 PHC2Q8IXK0 858 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 ATP6V1C2Q8NEY4 427 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 GATAD2BQ8WXI9 593 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 GFM1Q96RP9 751 aaKnown RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 GPA33Q99795 319 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 RACGAP1Q9H0H5 632 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 SNX7Q9UNH6 387 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 A0A0G2JN53 185 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 PLK4O00444 970 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 RORCP51449 518 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 EIF4HQ15056 248 aaKnown RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 PYDC2Q56P42 97 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 HORMAD2Q8N7B1 307 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 ZNF557Q8N988 423 aaPredicted RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 SLC7A6Q92536 515 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 CLP1Q92989 425 aaKnown RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 ASAH2Q9NR71 780 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 ZNF282Q9UDV7 671 aaPredicted RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 NDRG2Q9UN36 371 aaKnown RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 ENPP4Q9Y6X5 453 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 SLC35F4A4IF30 521 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 FABP12A6NFH5 140 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 TIE1P35590 1138 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 SOX18P35713 384 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 ALDH9A1P49189 494 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 RPS25P62851 125 aaKnown RBP19.98■□□□□ 0.79
CTCF-202ENST00000401394 TEAD4Q15561 434 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 USP45Q70EL2 814 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 RASGEF1AQ8N9B8 481 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 OR52N2Q8NGI0 321 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 TM9SF4Q92544 642 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 PPCDCQ96CD2 204 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 REEP4Q9H6H4 257 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 PRKAB1Q9Y478 270 aa19.98■□□□□ 0.79
CTCF-202ENST00000401394 IGLV3-16A0A075B6K0 115 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 PSMA1P25786 263 aaKnown RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 PXNP49023 591 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 MAN2A2P49641 1150 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 USP30Q70CQ3 517 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 CBARPQ8N350 705 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 CLIP3Q96DZ5 547 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 CCDC32Q9BV29 185 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 IRF2BPLQ9H1B7 796 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 SLC25A19Q9HC21 320 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 TXNL4BQ9NX01 149 aaKnown RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 PLEKHB1Q9UF11 243 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 MN1Q10571 1320 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 ANKDD1BA6NHY2 528 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 H7C4K7 107 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 NPC1O15118 1278 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 B4GALT2O60909 372 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 FURINP09958 794 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 CNTN1Q12860 1018 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 TARDBPQ13148 414 aaKnown RBP eCLIP19.97■□□□□ 0.79
CTCF-202ENST00000401394 SYTL3Q4VX76 610 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 GRHL2Q6ISB3 625 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 FAM46DQ8NEK8 389 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 TMCO6Q96DC7 493 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 GDF15Q99988 308 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 CRNNQ9UBG3 495 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 CMAHPQ9Y471 501 aa19.97■□□□□ 0.79
CTCF-202ENST00000401394 SPIN1Q9Y657 262 aaPredicted RBP19.97■□□□□ 0.79
CTCF-202ENST00000401394 NPIPB8E9PQR5 432 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 M0R3H8 397 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 RNASET2O00584 256 aaKnown RBP19.96■□□□□ 0.79
CTCF-202ENST00000401394 CCNYL3P0C7X3 344 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 MAP4K2Q12851 820 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 GPAT3Q53EU6 434 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 SLX4IPQ5VYV7 408 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 SAXO2Q658L1 398 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 TCTN3Q6NUS6 607 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 METTL2BQ6P1Q9 378 aaKnown RBP19.96■□□□□ 0.79
CTCF-202ENST00000401394 NOXA1Q86UR1 476 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 C16orf78Q8WTQ4 265 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 SLC38A5Q8WUX1 472 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 ZNF480Q8WV37 535 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 GEMIN6Q8WXD5 167 aaKnown RBP19.96■□□□□ 0.79
CTCF-202ENST00000401394 SNX18Q96RF0 628 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 GULP1Q9UBP9 304 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 CCL26Q9Y258 94 aa19.96■□□□□ 0.79
CTCF-202ENST00000401394 PRMT3O60678 531 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms