RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 BEST3Q8N1M1 668 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RYBPQ8N488 228 aaPredicted RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RNF10Q8N5U6 811 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 EMC1Q8N766 993 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SPATA4Q8NEY3 305 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CLHC1Q8NHS4 586 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF398Q8TD17 642 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 OTULINQ96BN8 352 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SGK3Q96BR1 496 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 OR1F2PQ96R84 312 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TESK2Q96S53 571 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PRMT1Q99873 361 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 CHRDL1Q9BU40 450 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TRMT61BQ9BVS5 477 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 LHPPQ9H008 270 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 WWP1Q9H0M0 922 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 SLA2Q9H6Q3 261 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 TMEM185BQ9H7F4 350 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 GEMIN7Q9H840 131 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 Q9H8V8 135 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 NRBP2Q9NSY0 501 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ACOXLQ9NUZ1 547 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 RCC2Q9P258 522 aaKnown RBP3.81□□□□□ -1.8
HMGB1-204ENST00000399489 PSORS1C1Q9UIG5 152 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 ATPIF1Q9UII2 106 aa3.81□□□□□ -1.8
HMGB1-204ENST00000399489 FNDC1Q4ZHG4 1894 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 WDR97A6NE52 1622 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 KANK1Q14678 1352 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 A0A087WUV0 522 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 TRAV25A0A0B4J276 109 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SMIM35A0A1B0GVV1 85 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 POC1B-GALNT4F8VUJ3 575 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 H7C1Q1 480 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 EEF2KO00418 725 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 TRDMT1O14717 391 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 CHUKO15111 745 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SULT1B1O43704 296 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SCO2O43819 266 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ACSL4O60488 711 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 LDB3O75112 727 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 NEBLO76041 1014 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 NDUFB4O95168 129 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 CPNE6O95741 557 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ALPIP09923 528 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SNHG28P0DPA3 235 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ST6GAL1P15907 406 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 MX1P20591 662 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ME1P48163 572 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 MMP15P51511 669 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SEC61GP60059 68 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 RPS15P62841 145 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 TPM4P67936 248 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 MBTD1Q05BQ5 628 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SULT2A1Q06520 285 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ENPEPQ07075 957 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 CRYZQ08257 329 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 RASGEF1BQ0VAM2 473 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 HYAL1Q12794 435 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 GPS2Q13227 327 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 HNRNPA1L2Q32P51 320 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 WLSQ5T9L3 541 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 FRG2Q64ET8 278 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ATL3Q6DD88 541 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 BLOC1S2Q6QNY1 142 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ZNF600Q6ZNG1 722 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 IL17RELQ6ZVW7 336 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 CYB5R4Q7L1T6 521 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 GPR141Q7Z602 305 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 MRPL10Q7Z7H8 261 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 CBWD2Q8IUF1 395 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 GPRC5AQ8NFJ5 357 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 OR5M8Q8NGP6 311 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 PAQR8Q8TEZ7 354 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 MITD1Q8WV92 249 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 PHYHIPQ92561 330 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 GLYATL1Q969I3 302 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 TSSK2Q96PF2 358 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 HAUS8Q9BT25 410 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 SF3B5Q9BWJ5 86 aaKnown RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 CIPCQ9C0C6 399 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 ZMYND12Q9H0C1 365 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 RAB18Q9NP72 206 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 PACSIN2Q9UNF0 486 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-204ENST00000399489 PRDM2Q13029 1718 aa3.8□□□□□ -1.8
HMGB1-204ENST00000399489 RNF222A6NCQ9 220 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CASTOR2A6NHX0 329 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 OR6C75A6NL08 312 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 GOLGA8TH3BQL2 631 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 PSMD11O00231 422 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LCMT2O60294 686 aaKnown RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 UPK3AO75631 287 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 BAG4O95429 457 aaKnown RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CLDN7O95471 211 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 TGM6O95932 706 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 GOT2P00505 430 aaKnown RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 LDLRP01130 860 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 SERPINF2P08697 491 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CHRM5P08912 532 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CLTAP09496 248 aa3.79□□□□□ -1.8
HMGB1-204ENST00000399489 CPN1P15169 458 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms