RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RPL38P63173 70 aaKnown RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 MC1RQ01726 317 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ADIGQ0VDE8 80 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SNTA1Q13424 505 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 GRIK4Q16099 956 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 DCAF12L1Q5VU92 463 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 MED27Q6P2C8 311 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CLEC14AQ86T13 490 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 FAM131BQ86XD5 332 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 NAXDQ8IW45 347 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 BIRC7Q96CA5 298 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF587Q96SQ5 575 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ELF4Q99607 663 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 DUSP26Q9BV47 211 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CDCA4Q9BXL8 241 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM100Q9NV29 134 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 DNAJC5BQ9UF47 199 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 FBXW11Q9UKB1 542 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 GPSM3Q9Y4H4 160 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SHROOM3Q8TF72 1996 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SPTBN1Q01082 2364 aaKnown RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 KCPQ6ZWJ8 1503 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ACOT7O00154 380 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CLDN4O14493 209 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ADAM12O43184 909 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TREHO43280 583 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 IL33O95760 270 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TFAP2AP05549 437 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 LHCGRP22888 699 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 PCGF2P35227 344 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CD86P42081 329 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ERFP50548 548 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF41P51814 821 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 PRKAG1P54619 331 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ARHGAP19Q14CB8 494 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 FAM162BQ5T6X4 162 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 AHSA2Q719I0 299 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 HIST2H3AQ71DI3 136 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CAND1Q86VP6 1230 aaKnown RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 PHYKPLQ8IUZ5 450 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CCDC71Q8IV32 467 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 FTMTQ8N4E7 242 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CRYGNQ8WXF5 182 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 DDX1Q92499 740 aaKnown RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ACSF2Q96CM8 615 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SLC25A32Q9H2D1 315 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SLC32A1Q9H598 525 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 VAPAQ9P0L0 249 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 PPP4R1LQ9P1A2 415 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 NDRG3Q9UGV2 375 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 LOC285095A0A1B0GVY8 99 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 I3L521 148 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SDHDO14521 159 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 LILRB5O75023 590 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CREG1O75629 220 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ATP5A1P25705 553 aaKnown RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 IDUAP35475 653 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 NPRL3Q12980 569 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 GCNT7Q6ZNI0 430 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 C17orf64Q86WR6 236 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF433Q8N7K0 673 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SFXN5Q8TD22 340 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CANT1Q8WVQ1 401 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 EDAQ92838 391 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 C1GALT1C1Q96EU7 318 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SYT17Q9BSW7 474 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZSCAN5AQ9BUG6 496 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CDT1Q9H211 546 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 KCNIP2Q9NS61 270 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 PNPOQ9NVS9 261 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CACNA1EQ15878 2313 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 A0A1W2PPM1 405 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TOR1AO14656 332 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 MMP20O60882 483 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 STK17BO94768 372 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 UBL3O95164 117 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 DNASE1P24855 282 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CD79BP40259 229 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 RRAS2P62070 204 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 DHCR24Q15392 516 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 GPAT4Q86UL3 456 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SLC22A16Q86VW1 577 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM143Q96AN5 459 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 BCAS3Q9H6U6 928 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 WDR55Q9H6Y2 383 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 NT5MQ9NPB1 228 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 THSD1Q9NS62 852 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SLC2A8Q9NY64 477 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SLC17A6Q9P2U8 582 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 REV1Q9UBZ9 1251 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 RNF150Q9ULK6 438 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 PTPRZ1P23471 2315 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CADP27708 2225 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 KRBA1A5PL33 1030 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF726A6NNF4 738 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 EFCAB7A8K855 629 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TSTD3H0UI37 97 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 RNF225M0QZC1 329 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TAAR5O14804 337 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms