RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 LHCGRP22888 699 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 PTX3P26022 381 aaPredicted RBP13.78□□□□□ -0.2
SMG6-215ENST00000574501 AVPR1BP47901 424 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 MAPKAPK2P49137 400 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 CTBP2P56545 445 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 NCF4Q15080 339 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 ANGPT1Q15389 498 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 CRTC2Q53ET0 693 aaPredicted RBP13.78□□□□□ -0.2
SMG6-215ENST00000574501 KLHL22Q53GT1 634 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 PRAMEF9Q5VWM5 478 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 CD300LGQ6UXG3 332 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 ZNF730Q6ZMV8 503 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 KIF18BQ86Y91 864 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 ADGRG2Q8IZP9 1017 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 THEM5Q8N1Q8 247 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 ZNF366Q8N895 744 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 OR8J2Q8NGG1 315 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 LHFPL5Q8TAF8 219 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.78□□□□□ -0.2
SMG6-215ENST00000574501 CSGALNACT1Q8TDX6 532 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 MTERF1Q99551 399 aaKnown RBP13.78□□□□□ -0.2
SMG6-215ENST00000574501 PIP5K1AQ99755 562 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 TMEM43Q9BTV4 400 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 TRAF4Q9BUZ4 470 aaPredicted RBP13.78□□□□□ -0.2
SMG6-215ENST00000574501 ASB8Q9H765 288 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 SLC28A3Q9HAS3 691 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 GPATCH2Q9NW75 528 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 IL17CQ9P0M4 197 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 SCML2Q9UQR0 700 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 CDH10Q9Y6N8 788 aa13.78□□□□□ -0.2
SMG6-215ENST00000574501 POLR2AP24928 1970 aaKnown RBP13.77□□□□□ -0.2
SMG6-215ENST00000574501 PCP4L1A6NKN8 68 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 GABRR3A8MPY1 467 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 H3BN98 237 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 H7C0S8 307 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 CHP2O43745 196 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 RAF1P04049 648 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TACR2P21452 398 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 ITPKAP23677 461 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 IL32P24001 234 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 SSTR2P30874 369 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TALDO1P37837 337 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 ETV5P41161 510 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 ETV1P50549 477 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 CCL23P55773 120 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 RBBP4Q09028 425 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 RPA4Q13156 261 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TEAD4Q15561 434 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 SNAPC1Q16533 368 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 BCL2L15Q5TBC7 163 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 KIAA1324Q6UXG2 1013 aaKnown RBP13.77□□□□□ -0.21
SMG6-215ENST00000574501 LINGO4Q6UY18 593 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TAGAPQ8N103 731 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TCEANCQ8N8B7 351 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 PROKR2Q8NFJ6 384 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 SKA2Q8WVK7 121 aaPredicted RBP13.77□□□□□ -0.21
SMG6-215ENST00000574501 TM9SF4Q92544 642 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TOE1Q96GM8 510 aaKnown RBP13.77□□□□□ -0.21
SMG6-215ENST00000574501 KATNAL1Q9BW62 490 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 TMEM121BQ9BXQ6 578 aaPredicted RBP13.77□□□□□ -0.21
SMG6-215ENST00000574501 KCNN2Q9H2S1 579 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 FZD3Q9NPG1 666 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 ING4Q9UNL4 249 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 PCDHB9Q9Y5E1 797 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 PCDHGB7Q9Y5F8 929 aa13.77□□□□□ -0.21
SMG6-215ENST00000574501 RPL9P32969 192 aaKnown RBP13.76□□□□□ -0.21
SMG6-215ENST00000574501 STK19P49842 368 aaPredicted RBP13.76□□□□□ -0.21
SMG6-215ENST00000574501 OR2G6Q5TZ20 316 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 FRG2Q64ET8 278 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 TYW3Q6IPR3 259 aaKnown RBP13.76□□□□□ -0.21
SMG6-215ENST00000574501 BRAT1Q6PJG6 821 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 OTOP2Q7RTS6 562 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 ZFP41Q8N8Y5 198 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 FRG2BQ96QU4 278 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 CDCP1Q9H5V8 836 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 HEXA-AS1Q9H8Q6 139 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 ZFP64Q9NPA5 681 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 SLC22A14Q9Y267 594 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 NCKAP1Q9Y2A7 1128 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 CASKO14936 926 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 XCR1P46094 333 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 LIMS1P48059 325 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 CCT3P49368 545 aaKnown RBP13.76□□□□□ -0.21
SMG6-215ENST00000574501 PPP3R1P63098 170 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 SCARB2Q14108 478 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 SF3A2Q15428 464 aaKnown RBP13.76□□□□□ -0.21
SMG6-215ENST00000574501 GPRC6AQ5T6X5 926 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 CPTPQ5TA50 214 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 MEDAGQ5VYS4 303 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 CEACAM20Q6UY09 585 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 OR4A15Q8NGL6 344 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 AP3S1Q92572 193 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 PKP4Q99569 1192 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 MED28Q9H204 178 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 ACSL6Q9UKU0 697 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 ST3GAL5Q9UNP4 418 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 NLRC5Q86WI3 1866 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 NINQ8N4C6 2090 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 PIKFYVEQ9Y2I7 2098 aa13.76□□□□□ -0.21
SMG6-215ENST00000574501 GREB1Q4ZG55 1949 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms