RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CLCNKAP51800 687 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 DGKEP52429 567 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 MANFP55145 182 aaKnown RBP8.52□□□□□ -1.05
SYNE1-217ENST00000466159 OCA2Q04671 838 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 HSPB3Q12988 150 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 RPA4Q13156 261 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 PUM1Q14671 1186 aaKnown RBP eCLIP8.52□□□□□ -1.05
SYNE1-217ENST00000466159 EGFLAMQ63HQ2 1017 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 ARMC8Q8IUR7 673 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 NLGN4XQ8N0W4 816 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 SLC38A5Q8WUX1 472 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 GGHQ92820 318 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 RAB8BQ92930 207 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 ARMC5Q96C12 935 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 COX4I2Q96KJ9 171 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 AIF1LQ9BQI0 150 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 HDAC8Q9BY41 377 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 RHBGQ9H310 441 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 LHX9Q9NQ69 397 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 MBNL1Q9NR56 388 aaKnown RBP8.52□□□□□ -1.05
SYNE1-217ENST00000466159 ANGPT4Q9Y264 503 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 POFUT2Q9Y2G5 429 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 WDR37Q9Y2I8 494 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 SNX11Q9Y5W9 270 aa8.52□□□□□ -1.05
SYNE1-217ENST00000466159 A0A0G2JN53 185 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 A0A1W2PPV9 198 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CLDN25C9JDP6 229 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 FAM227AF5H4B4 570 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 PPM1DO15297 605 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 MID1O15344 667 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 MRPS14O60783 128 aaKnown RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 B4GALT2O60909 372 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 GADD45GO95257 159 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 IFNA14P01570 189 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 BCHEP06276 602 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 LIPAP38571 399 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 LIMS1P48059 325 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 PXNP49023 591 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 TAS2R38P59533 333 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 TANGO2Q6ICL3 276 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 GET4Q7L5D6 327 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 DSG4Q86SJ6 1040 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 TRIM73Q86UV7 250 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 DNAJC22Q8N4W6 341 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 AMER3Q8N944 861 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 DYNC2LI1Q8TCX1 351 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 EXOSC8Q96B26 276 aaKnown RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 LGALS12Q96DT0 336 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 PDXPQ96GD0 296 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 BCL7BQ9BQE9 202 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 ARMC7Q9H6L4 198 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 PALMDQ9NP74 551 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 GPR83Q9NYM4 423 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 ERGIC3Q9Y282 383 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 FAM32AQ9Y421 112 aaKnown RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 ENPP4Q9Y6X5 453 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 SZT2Q5T011 3432 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CLCA1A8K7I4 914 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 M0R082 166 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CAPN5O15484 640 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 OR1F1O43749 312 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 TMPRSS11DO60235 418 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 LCMT2O60294 686 aaKnown RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 SULT1C4O75897 302 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 FUCA1P04066 466 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 HNRNPCP07910 306 aaKnown RBP eCLIP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 OCM2P0CE71 109 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 OCMP0CE72 109 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 IMPDH2P12268 514 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CCR8P51685 355 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 HMGA2P52926 109 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 LIM2P55344 173 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CSNK2BP67870 215 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 UBE2UQ5VVX9 321 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 SAXO2Q658L1 398 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 REEP3Q6NUK4 255 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 PSRC1Q6PGN9 363 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 FBXO46Q6PJ61 603 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF605Q86T29 641 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 SNX29P2Q8IUI4 249 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 RBM12BQ8IXT5 1001 aaKnown RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 LINC01555Q8NAE3 123 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 PHF10Q8WUB8 498 aaKnown RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 HERVK_113Q902F9 699 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 KLK6Q92876 244 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 RAB7BQ96AH8 199 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 ITPAQ9BY32 194 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CERS4Q9HA82 394 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF556Q9HAH1 456 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 AKIP1Q9NQ31 210 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 TEX10Q9NXF1 929 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 SPATA7Q9P0W8 599 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 THAP10Q9P2Z0 257 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-217ENST00000466159 SERGEFQ9UGK8 458 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 DPP7Q9UHL4 492 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 HCN4Q9Y3Q4 1203 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 RWDD3Q9Y3V2 267 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 CKAP5Q14008 2032 aa8.51□□□□□ -1.05
SYNE1-217ENST00000466159 WASHC1A8K0Z3 465 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms